Contig 010554:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS043E06Sequence642010554 (2)ref|XP_009781239.1|1e-125PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Nicotiana sylv
JMSF003D09Sequence278010554 (2)ref|XP_009781239.1|7e-27PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Nicotiana sylv728017057ref|XP_009781239.1|3e-89PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Nicotiana sylv

Alignment

This contig is upended


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JMFS043E06+                                                           GACATGAATTTT
                      ____________________________________________________________
consensus                                                             GACATGAATTTT
 
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JMFS043E06+           CCCATCAGTGCATCCCACAGCAACAACATCTAGTGCTGGCGATGATATACAGCAATTTAT
                      ____________________________________________________________
consensus             CCCATCAGTGCATCCCACAGCAACAACATCTAGTGCTGGCGATGATATACAGCAATTTAT
 
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JMFS043E06+           AGAAGACTTCCACCTATTGAACTCATATACTTTTTTCTTTGTGCTAATGTTCCAAAGTTG
                      ____________________________________________________________
consensus             AGAAGACTTCCACCTATTGAACTCATATACTTTTTTCTTTGTGCTAATGTTCCAAAGTTG
 
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JMFS043E06+           CAGAGTACCTTCTTGACTTCCAACAATAACCTTGTTTAAATAAGTATCTGGATGCATTAT
                      ____________________________________________________________
consensus             CAGAGTACCTTCTTGACTTCCAACAATAACCTTGTTTAAATAAGTATCTGGATGCATTAT
 
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JMFS043E06+           GCAGCTAGGTGTGAATGTGCCGTCTAGCAACATGTGTCCAACTGGAGCAACGTTCTCATC
                      ____________________________________________________________
consensus             GCAGCTAGGTGTGAATGTGCCGTCTAGCAACATGTGTCCAACTGGAGCAACGTTCTCATC
 
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JMFS043E06+           TATTCCTTTGAAGTTCCATGTGTAGATATTACCTTCAACATCAACACTTAAGATGTGGTC
                      ____________________________________________________________
consensus             TATTCCTTTGAAGTTCCATGTGTAGATATTACCTTCAACATCAACACTTAAGATGTGGTC
 
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JMFS043E06+           ACCGAAAAGTAGCAAGTGGTTAACCTTAGCGCTATGCTTGCTCCAAGTAGCCACCTGATG
                      ____________________________________________________________
consensus             ACCGAAAAGTAGCAAGTGGTTAACCTTAGCGCTATGCTTGCTCCAAGTAGCCACCTGATG
 
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JMFS043E06+           AGCACGCTTGACAACTGCAATGTCATTTCCATAGGCAGCAAATGTGTAGTCACGGTAAGA
                      ____________________________________________________________
consensus             AGCACGCTTGACAACTGCAATGTCATTTCCATAGGCAGCAAATGTGTAGTCACGGTAAGA
 
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JMFS043E06+           AGCAAGAGCTCGTATCTTCTTTGGTAGTTGAGGGCCAACGAGAACCAAATTGAGCTTGGC
JMSF003D09+                                 GGTAGTTGAGGGCCAACGAGAACCAAATTGAGCTTGGC
                      ____________________________________________________________
consensus             AGCAAGAGCTCGTATCTTCTTTGGTAGTTGAGGGCCAACGAGAACCAAATTGAGCTTGGC
 
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JMFS043E06+           GCAGTTGTAAATCTGGAAAGCTTTGCCGATGCTGACGGTGACGAAGGTCTCGGTGCCGAG
JMSF003D09+           GCAGTTGTAAATCTGGAAAGCTTTGCCGATGCTGACGGTGACGAAGGTCTCGGTGCCGAG
                      ____________________________________________________________
consensus             GCAGTTGTAAATCTGGAAAGCTTTGCCGATGCTGACGGTGACGAAGGTCTCGGTGCCGAG
 
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JMFS043E06+           TCTCTGTACAGAGATGGGGACGTTGCTCGTAATATATCCAATTGCTCTGAATGGTTCGAA
JMSF003D09+           TCTCTGTACAGAGATGGGGACGTTGCTCGTAATATATCCAATTGCTCTGAATGGTTCGAA
                      ____________________________________________________________
consensus             TCTCTGTACAGAGATGGGGACGTTGCTCGTAATATATCCAATTGCTCTGAATGGTTCGAA
 
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JMFS043E06+           AATCCCCATTCTTGTTGAGCTTCGTTCTGC                              
JMSF003D09+           AATCCCCATTCTTGTTGAGCTTCGTTCTGCTACAACAACAACCAGAAGGAGAACAGAAGG
                      ____________________________________________________________
consensus             AATCCCCATTCTTGTTGAGCTTCGTTCTGCTACAACAACAACCAGAAGGAGAACAGAAGG
 
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JMSF003D09+           AAAAGAAGGAGAGAATGGCGTCCGCATCCAGGGTTTAGGGTTTTGGTAGAGGGGAGAATC
                      ____________________________________________________________
consensus             AAAAGAAGGAGAGAATGGCGTCCGCATCCAGGGTTTAGGGTTTTGGTAGAGGGGAGAATC