Contig 010543:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014P10Sequence433000463 (9)ref|XP_009629282.1|2e-27PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana tomentosiform765010543 (5)ref|XP_010325538.1|2e-13PREDICTED: regulator of nonsense transcripts 1 homolog isoform X2 [Solanum lyco
JMFF034F16Sequence495000463 (9)ref|XP_009629282.1|3e-26PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana tomentosiform656010543 (5)
JMSF001N17Sequence178010543 (5)120010543 (5)
JMSF008A03Sequence504010543 (5)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF014P10+ ACAAGCTGGATACAATGAACTAGCAATAGATGATG
                      ____________________________________________________________
consensus ACAAGCTGGATACAATGAACTAGCAATAGATGATG
 
. : . : . : . : . : . :
rJMFF014P10+ CTTCACAGAACCATTTTGGCATGTCCAATGCCAGTACACTTCATTCTCAGGGTATACTGA
                      ____________________________________________________________
consensus CTTCACAGAACCATTTTGGCATGTCCAATGCCAGTACACTTCATTCTCAGGGTATACTGA
 
. : . : . : . : . : . :
rJMFF034F16+ CTACTCCCAGCCATTTGGGCACTATAACTCGCAACCCATGAACCTGGAAAATT
rJMFF014P10+ ATCCTCTCTACTCCCAGCCATTTGGGCACTATAACTCGCAACCCATGAACCTGGAAAATT
                      ____________________________________________________________
consensus ATCCTCTCTACTCCCAGCCATTTGGGCACTATAACTCGCAACCCATGAACCTGGAAAATT
 
. : . : . : . : . : . :
rJMFF034F16+ CCCAACCTCAACAGCAGCAAGCCCCTCAGGGCCAAGGCTCACAAAATCAAAAGCTTCAGT
rJMFF014P10+ CCCAACCTCAACAGCAGCAAGCCCCTCAGGGCCAAGGCTCACAAAATCAAAAGCTTCAGT
                      ____________________________________________________________
consensus CCCAACCTCAACAGCAGCAAGCCCCTCAGGGCCAAGGCTCACAAAATCAAAAGCTTCAGT
 
. : . : . : . : . : . :
rJMFF034F16+ ATAGCAGTTGAGAACCATTTGGTTGGTATATGTAAGGGGGGGTTATACTTTTGCATCCAG
rJMFF014P10+ ATAGCAGTTGAGAACCATTTGGTTGGTATATGTAAGGGGGGGTTATACTTTTGCATCCAG
                      ____________________________________________________________
consensus ATAGCAGTTGAGAACCATTTGGTTGGTATATGTAAGGGGGGGTTATACTTTTGCATCCAG
 
. : . : . : . : . : . :
rJMFF034F16+ CTACTTGGTTTGTGCTTGTCATGTGTGTTATTGGCCGTTGCGAATAATTAATGAGTTTGG
rJMSF008A03+ GAATAATTAACGAGTTTGN
rJMFF014P10+ CTACTTGGTTTGTGCTTGTCATGTGTGTTATTGGCCGTTGCGAATAATTAATGAGTTTGG
                      ____________________________________________________________
consensus CTACTTGGTTTGTGCTTGTCATGTGTGTTATTGGCCGTTGCGAATAATTAATGAGTTTGG
 
. : . : . : . : . : . :
rJMFF034F16+ TTGATGACAACTAAGGAATGATTGGTTGGGAGAGTTGCGAGATGGAAACTGGCTTCTGCA
rJMSF008A03+ TNGATGACNCNTAAGGAATGANTGGTTGGGAGAGNTGCGAGATGGAANCTGGCTNCTGCA
rJMFF014P10+ TTGATGACAACTAAGGAATGATTGGTTGGGAGAGTTGCGAGATGGAAACTGGCTTCTGCA
                      ____________________________________________________________
consensus TTGATGACAACTAAGGAATGATTGGTTGGGAGAGTTGCGAGATGGAAACTGGCTTCTGCA
 
. : . : . : . : . : . :
rJMFF034F16+ TCTGGTGGTGGGATGATCACGGGCAGCACATCGGGTGCTGAGAAAAGAATATAAACCCTA
rJMSF008A03+ TCNGGTGGTGGGATGNTCACGGGCAGCACATCGGGTGNTGAGAAAAGAATATAAACCCTA
rJMFF014P10+ TCTGGTGGTGGGATGATCACGGGCAGCACATCGGGTGCTGAGAAAAGAATATAAACCCTA
                      ____________________________________________________________
consensus TCTGGTGGTGGGATGATCACGGGCAGCACATCGGGTGCTGAGAAAAGAATATAAACCCTA
 
. : . : . : . : . : . :
rJMFF034F16+ TTTATCATCTTCTGGAAGTTGTGTAATAGTGAGTGATGAAAGAAAAATTGTGCATTTTGG
rJMSF008A03+ TGTATCATCTTNTGGAANTTGCGTAATAGTGNNTGATGAAAGAGAAATTGNGCATTTTG-
rJMFF014P10+ TTTATCATCTTCTGGAAGTTGTGTAATAGTGAGTGATGAAAGAAAAATTGTGCATTTTGG
                      ____________________________________________________________
consensus TTTATCATCTTCTGGAAGTTGTGTAATAGTGAGTGATGAAAGAAAAATTGTGCATTTTGG
 
. : . : . : . : . : . :
rJMFF034F16+ AGAGAGCATTACATGGGCAAGGGATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
rJMSF008A03+ -GAGAGCATTACATGGGCAAGGCATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
rJMFF014P10+ AGAGAGCATTACATGGGCAAGGGATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
                      ____________________________________________________________
consensus AGAGAGCATTACATGGGCAAGGGATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
 
. : . : . : . : . : . :
rJMFF034F16+ GAGATTTGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTGCATGGCAGGAT
rJMSF008A03+ GAGATTNGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTNCATGGCAGGAN
rJMFF014P10+ GAGATTTGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTGCATGGCAGGAT
                      ____________________________________________________________
consensus GAGATTTGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTGCATGGCAGGAT
 
. : . : . : . : . : . :
rJMFF034F16+ GGATACTCACTCGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
rJMSF008A03+ GGATA
rJMSF001N17+ GGATACTCACTTGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
rJMFF014P10+ GGATACTCACTCGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
JMSF001N17- GGATACTCACTTGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
                      ____________________________________________________________
consensus GGATACTCACTTGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
 
. : . : . : . : . : . :
rJMFF034F16+ GTGTTACTAGTATAGTACCCAGTTTAGCACTAACACACTTATTTTATATTAGAATAATAT
rJMSF001N17+ GTGTTACTAGTATAGTACCCAGTTTAGCACTA--ACACTTATTTTATATTAGAATAATAT
rJMFF014P10+ GTGTTACTAGTATAGTACCCAGTTTAGCACTAACACACTTATTTTATATTAGAATAATAT
JMSF001N17- GTGTTACTAGTATAGTACCCAGTTTAGCACTA--ACACTTATTTTATATTAGAATAATAT
                      ____________________________________________________________
consensus GTGTTACTAGTATAGTACCCAGTTTAGCACTA--ACACTTATTTTATATTAGAATAATAT
 
. : . : . : . : . : . :
rJMFF034F16+ AA
rJMSF001N17+ AA
rJMFF014P10+ AAT
JMSF001N17- AATATAATATGGTGCTCTAGTCTTTGATGAAATTGGTTTTTCACATTATCNAAAAAAAAA
                      ____________________________________________________________
consensus AATATAATATGGTGCTCTAGTCTTTGATGAAATTGGTTTTTCACATTATCNAAAAAAAAA