Contig 010543:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014P10Sequence433000463 (9)ref|XP_009629282.1|2e-27PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana tomentosiform765010543 (5)ref|XP_010325538.1|2e-13PREDICTED: regulator of nonsense transcripts 1 homolog isoform X2 [Solanum lyco
JMFF034F16Sequence495000463 (9)ref|XP_009629282.1|3e-26PREDICTED: regulator of nonsense transcripts 1 homolog [Nicotiana tomentosiform656010543 (5)
JMSF001N17Sequence178010543 (5)120010543 (5)
JMSF008A03Sequence504010543 (5)

Alignment

This contig is upended


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rJMFF014P10+                                   ACAAGCTGGATACAATGAACTAGCAATAGATGATG
                      ____________________________________________________________
consensus                                      ACAAGCTGGATACAATGAACTAGCAATAGATGATG
 
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rJMFF014P10+          CTTCACAGAACCATTTTGGCATGTCCAATGCCAGTACACTTCATTCTCAGGGTATACTGA
                      ____________________________________________________________
consensus             CTTCACAGAACCATTTTGGCATGTCCAATGCCAGTACACTTCATTCTCAGGGTATACTGA
 
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rJMFF034F16+                 CTACTCCCAGCCATTTGGGCACTATAACTCGCAACCCATGAACCTGGAAAATT
rJMFF014P10+          ATCCTCTCTACTCCCAGCCATTTGGGCACTATAACTCGCAACCCATGAACCTGGAAAATT
                      ____________________________________________________________
consensus             ATCCTCTCTACTCCCAGCCATTTGGGCACTATAACTCGCAACCCATGAACCTGGAAAATT
 
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rJMFF034F16+          CCCAACCTCAACAGCAGCAAGCCCCTCAGGGCCAAGGCTCACAAAATCAAAAGCTTCAGT
rJMFF014P10+          CCCAACCTCAACAGCAGCAAGCCCCTCAGGGCCAAGGCTCACAAAATCAAAAGCTTCAGT
                      ____________________________________________________________
consensus             CCCAACCTCAACAGCAGCAAGCCCCTCAGGGCCAAGGCTCACAAAATCAAAAGCTTCAGT
 
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rJMFF034F16+          ATAGCAGTTGAGAACCATTTGGTTGGTATATGTAAGGGGGGGTTATACTTTTGCATCCAG
rJMFF014P10+          ATAGCAGTTGAGAACCATTTGGTTGGTATATGTAAGGGGGGGTTATACTTTTGCATCCAG
                      ____________________________________________________________
consensus             ATAGCAGTTGAGAACCATTTGGTTGGTATATGTAAGGGGGGGTTATACTTTTGCATCCAG
 
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rJMFF034F16+          CTACTTGGTTTGTGCTTGTCATGTGTGTTATTGGCCGTTGCGAATAATTAATGAGTTTGG
rJMSF008A03+                                                   GAATAATTAACGAGTTTGN
rJMFF014P10+          CTACTTGGTTTGTGCTTGTCATGTGTGTTATTGGCCGTTGCGAATAATTAATGAGTTTGG
                      ____________________________________________________________
consensus             CTACTTGGTTTGTGCTTGTCATGTGTGTTATTGGCCGTTGCGAATAATTAATGAGTTTGG
 
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rJMFF034F16+          TTGATGACAACTAAGGAATGATTGGTTGGGAGAGTTGCGAGATGGAAACTGGCTTCTGCA
rJMSF008A03+          TNGATGACNCNTAAGGAATGANTGGTTGGGAGAGNTGCGAGATGGAANCTGGCTNCTGCA
rJMFF014P10+          TTGATGACAACTAAGGAATGATTGGTTGGGAGAGTTGCGAGATGGAAACTGGCTTCTGCA
                      ____________________________________________________________
consensus             TTGATGACAACTAAGGAATGATTGGTTGGGAGAGTTGCGAGATGGAAACTGGCTTCTGCA
 
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rJMFF034F16+          TCTGGTGGTGGGATGATCACGGGCAGCACATCGGGTGCTGAGAAAAGAATATAAACCCTA
rJMSF008A03+          TCNGGTGGTGGGATGNTCACGGGCAGCACATCGGGTGNTGAGAAAAGAATATAAACCCTA
rJMFF014P10+          TCTGGTGGTGGGATGATCACGGGCAGCACATCGGGTGCTGAGAAAAGAATATAAACCCTA
                      ____________________________________________________________
consensus             TCTGGTGGTGGGATGATCACGGGCAGCACATCGGGTGCTGAGAAAAGAATATAAACCCTA
 
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rJMFF034F16+          TTTATCATCTTCTGGAAGTTGTGTAATAGTGAGTGATGAAAGAAAAATTGTGCATTTTGG
rJMSF008A03+          TGTATCATCTTNTGGAANTTGCGTAATAGTGNNTGATGAAAGAGAAATTGNGCATTTTG-
rJMFF014P10+          TTTATCATCTTCTGGAAGTTGTGTAATAGTGAGTGATGAAAGAAAAATTGTGCATTTTGG
                      ____________________________________________________________
consensus             TTTATCATCTTCTGGAAGTTGTGTAATAGTGAGTGATGAAAGAAAAATTGTGCATTTTGG
 
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rJMFF034F16+          AGAGAGCATTACATGGGCAAGGGATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
rJMSF008A03+          -GAGAGCATTACATGGGCAAGGCATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
rJMFF014P10+          AGAGAGCATTACATGGGCAAGGGATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
                      ____________________________________________________________
consensus             AGAGAGCATTACATGGGCAAGGGATTGCTGGAGGTATGGCCTATGGGGTGTTCAAAAGCA
 
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rJMFF034F16+          GAGATTTGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTGCATGGCAGGAT
rJMSF008A03+          GAGATTNGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTNCATGGCAGGAN
rJMFF014P10+          GAGATTTGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTGCATGGCAGGAT
                      ____________________________________________________________
consensus             GAGATTTGGGTGGCTTCATTAGAAAGATGGGAGCTGCTGGTGGACTCTGCATGGCAGGAT
 
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rJMFF034F16+          GGATACTCACTCGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
rJMSF008A03+          GGATA                                                       
rJMSF001N17+          GGATACTCACTTGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
rJMFF014P10+          GGATACTCACTCGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
JMSF001N17-           GGATACTCACTTGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
                      ____________________________________________________________
consensus             GGATACTCACTTGGCTTAACATCATCAGTTCCTTCTCACATGTAATTAATTATACTTCAG
 
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rJMFF034F16+          GTGTTACTAGTATAGTACCCAGTTTAGCACTAACACACTTATTTTATATTAGAATAATAT
rJMSF001N17+          GTGTTACTAGTATAGTACCCAGTTTAGCACTA--ACACTTATTTTATATTAGAATAATAT
rJMFF014P10+          GTGTTACTAGTATAGTACCCAGTTTAGCACTAACACACTTATTTTATATTAGAATAATAT
JMSF001N17-           GTGTTACTAGTATAGTACCCAGTTTAGCACTA--ACACTTATTTTATATTAGAATAATAT
                      ____________________________________________________________
consensus             GTGTTACTAGTATAGTACCCAGTTTAGCACTA--ACACTTATTTTATATTAGAATAATAT
 
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rJMFF034F16+          AA                                                          
rJMSF001N17+          AA                                                          
rJMFF014P10+          AAT                                                         
JMSF001N17-           AATATAATATGGTGCTCTAGTCTTTGATGAAATTGGTTTTTCACATTATCNAAAAAAAAA
                      ____________________________________________________________
consensus             AATATAATATGGTGCTCTAGTCTTTGATGAAATTGGTTTTTCACATTATCNAAAAAAAAA