Contig 010539:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-                                                   TATGAAATGCAGGCAATAC
                      ____________________________________________________________
consensus                                                      TATGAAATGCAGGCAATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          ATTTTACAGAGAGTTCATGCTCATAAACAACTAATATGGAATTATGGATGGTACATATTT
rJMSF039H23-                                                      TGGATGGTACATATTT
                      ____________________________________________________________
consensus             ATTTTACAGAGAGTTCATGCTCATAAACAACTAATATGGAATTATGGATGGTACATATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          TGTGAAGTTAAAAAGGTTTCATGCTCATACATTTTACACTCAACTTGTCACACCAACATC
rJMSF039H23-          TGTGAAGTTAAAAAGGTTTCATGCTCATACATTTTACACTCAACTTGTCACACCAACATC
                      ____________________________________________________________
consensus             TGTGAAGTTAAAAAGGTTTCATGCTCATACATTTTACACTCAACTTGTCACACCAACATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          TAGGACTCTGGAGATAACTATTATCTTCCTACCTCCTAAAGGCATTGCGTTCGGTTGCTT
rJMSF039H23-          TAGGACTCTGGAGATAACTATTATCTTCCTACCTCCTAAAGGCATTGCGTTCGGTTGCTT
                      ____________________________________________________________
consensus             TAGGACTCTGGAGATAACTATTATCTTCCTACCTCCTAAAGGCATTGCGTTCGGTTGCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          CTGATCTCCCCTGCAAATAATGCGTTCGGCGCCGCACACTCTCTTCTATGGTGGTGCTTC
rJMSF039H23-          CTGATCTCCCCTGCAAATAATGCGTTCGGCGCCGCACACTCTCTTCTATGGTGGTGCTTC
                      ____________________________________________________________
consensus             CTGATCTCCCCTGCAAATAATGCGTTCGGCGCCGCACACTCTCTTCTATGGTGGTGCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          CTCCCTTCTCAGCCCCATATATGCTTCTATGAGCAGCATCCAGGAAATTTCTTCCACCGG
rJMSF039H23-          CTCCCTTCTCAGCCCCATATATGCTTCTATGAGCAGCATCCAGGAAATTTCTTCCACCGG
                      ____________________________________________________________
consensus             CTCCCTTCTCAGCCCCATATATGCTTCTATGAGCAGCATCCAGGAAATTTCTTCCACCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          TTGAGTGAGCACCAACAGCTTCCTTCGCGTCATTTTCATCCGCCTTCTTTAGCCTTTTCC
rJMSF039H23-          TTGAGTGAGCACCAACAGCTTCCTTCGCGTCATTTTCATCCGCCTTCTTTAGCCTTTTCC
                      ____________________________________________________________
consensus             TTGAGTGAGCACCAACAGCTTCCTTCGCGTCATTTTCATCCGCCTTCTTTAGCCTTTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          ATCTTTGCTCCTCGTGCAGCTCAGCATCTAGCTGCATCTCCCGCAGCCTGGCAGCTCTCT
rJMSF039H23-          ATCTTTGCTCCTCGTGCAGCTCAGCATCTAGCTGCATCTCCCGCAGCCTGGCAGCTCTCT
                      ____________________________________________________________
consensus             ATCTTTGCTCCTCGTGCAGCTCAGCATCTAGCTGCATCTCCCGCAGCCTGGCAGCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          CTTCTTCAGAAAGTCTAACCGGATTCCTGCGTTTGTTTGCTTCACGCTTTGGTGAAGCGT
rJMSF039H23-          CTTCTTCAGAAAGTCTAACCGGATTCCTGCGTTTGTTTGCTTCACGCTTTGGTGAAGCGT
                      ____________________________________________________________
consensus             CTTCTTCAGAAAGTCTAACCGGATTCCTGCGTTTGTTTGCTTCACGCTTTGGTGAAGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          CTCTCCGTGTAAAGTCTCTATGTTCTCTCTCCCTTGCATCACCAGATTCTCTCTGCCCGT
rJMSF039H23-          CTCTCCGTGTAAAGTCTCTATGTTCTCTCTCCCTTGCATCACCAGATTCTCTCTGCCCGT
JMFS141H08+                CGTGTAAAGTCTCTATGTTCTCTCTCCCTTGCATCACCAGATTCTCTCTGCCCGT
                      ____________________________________________________________
consensus             CTCTCCGTGTAAAGTCTCTATGTTCTCTCTCCCTTGCATCACCAGATTCTCTCTGCCCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          AATTATTACTATCATGTTTGCTCTTACGTCTATAATCACCACCACGCTCTCCGTCAGATT
rJMSF039H23-          AATTATTACTATCATGTTTGCTCTTACGTCTATAATCACCACCACGCTCTCCGTCAGATT
JMFS141H08+           AATTATTACTATCATGTTTGCTCTTACGTCTATAATCACCACCACGCTCTCCGTCAGATT
                      ____________________________________________________________
consensus             AATTATTACTATCATGTTTGCTCTTACGTCTATAATCACCACCACGCTCTCCGTCAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          TCAAATCTGACCCTCTAGTCTGCATATCTTTGTGTTTTCGGTCCCTATGTCGATCTCTCT
rJMSF039H23-          TCAAATCTGACCCTCTAGTCTGCATATCTTTGTGTTTTCGGTCCCTATGTCGATCTCTCT
JMFS141H08+           TCAAATCTGACCCTCTAGTCTGCATATCTTTGTGTTTTCGGTCCCTATGTCGATCTCTCT
                      ____________________________________________________________
consensus             TCAAATCTGACCCTCTAGTCTGCATATCTTTGTGTTTTCGGTCCCTATGTCGATCTCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          TCCCTCGGTAATCCCCTTCACTTGAATCTTTATCTGACTCTCTAGTCTGCATATCTTTGT
rJMSF039H23-          TCCCTCGGTAATCCCCTTCACTTGAATCTTTATCTGACTCTCTAGTCTGCATATCTTTGT
JMFS141H08+           TCCCTCGGTAATCCCCTTCACTTGAATCTTTATCTGACTCTCTAGTCTGCATATCTTTGT
                      ____________________________________________________________
consensus             TCCCTCGGTAATCCCCTTCACTTGAATCTTTATCTGACTCTCTAGTCTGCATATCTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          GGTTTCGGTCCCTATGTCGATCTCTCTTCCCTCGGTAATCCCCTTCACTTGAATC-TTAT
rJMSF039H23-          GGTTTCGGTCCCTATGTCGATCTCTCTTCCCTCGGTAATCCCCTTCACTTGAATCTTTAT
JMFS141H08+           GGTTTCGGTCCCTATGTCGATCTCTCTTCCCTCGGTAATCCCCTTCACTTGAATCTTTAT
                      ____________________________________________________________
consensus             GGTTTCGGTCCCTATGTCGATCTCTCTTCCCTCGGTAATCCCCTTCACTTGAATCTTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF001G20-          CTGACTCTCTAGTCTGCA                                          
rJMSF039H23-          CTGACTCTCTAGTCTGCATATCTTTGTGTTTTCGATCCCCATGTCTATCTCTCTTCCCTT
JMFS141H08+           CTGACTCTCTAGTCTGCATATCTTTGTGTTTTCGATCCCCATGTCTATCTCTCTTCCCTT
                      ____________________________________________________________
consensus             CTGACTCTCTAGTCTGCATATCTTTGTGTTTTCGATCCCCATGTCTATCTCTCTTCCCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF039H23-          GTTCTTCCCCATCACTTGAATCTTCATCTGAACTTGAACTACGGCGCTTTG         
JMFS141H08+           GTTCTTCCCCATCACTTGAATCTTCATCTGAACTTGAACTACGGCGCTTTGACTTTTTGT
                      ____________________________________________________________
consensus             GTTCTTCCCCATCACTTGAATCTTCATCTGAACTTGAACTACGGCGCTTTGACTTTTTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141H08+           GATGCTTAGACTTCTTATGATGATGCTTCTTTCTGAGCTTCTCCCCGTCTTTTTCATCAT
                      ____________________________________________________________
consensus             GATGCTTAGACTTCTTATGATGATGCTTCTTTCTGAGCTTCTCCCCGTCTTTTTCATCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141H08+           GACTCTTATCCTTTTGCTTCATTGCTTCAACAGATTTCTTAATCATGGCCATCTGTACTG
JMSF039H23+                                   CTTCAACAGATTTCTTAATCATGGCCATCTGTACTG
                      ____________________________________________________________
consensus             GACTCTTATCCTTTTGCTTCATTGCTTCAACAGATTTCTTAATCATGGCCATCTGTACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141H08+           GATTGTTCTTCACACGAGCTAAAGCATCTTGCTCCCGTTGACGAATTAATAGCAAAGGAT
JMSF039H23+           GATTGTTCTTCACACGAGCTAAAGCATCTTGCTCCCGTTGACGAATTAATAGCAAAGGAT
                      ____________________________________________________________
consensus             GATTGTTCTTCACACGAGCTAAAGCATCTTGCTCCCGTTGACGAATTAATAGCAAAGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS141H08+           CTGAATGGAGTTTCCTCCAAGCATCAT                                 
JMSF039H23+           CTGAATGGAGTTTCCTCCAAGCATCATTGGCAGATTGTGGTTTATCTTCAAATAAGGCAC
                      ____________________________________________________________
consensus             CTGAATGGAGTTTCCTCCAAGCATCATTGGCAGATTGTGGTTTATCTTCAAATAAGGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           CAGGCGTCGCTGATTGTGGCTTGGAAGCAGAAGAAGAGGCAGGTGTTGAATCAGGAGGAT
                      ____________________________________________________________
consensus             CAGGCGTCGCTGATTGTGGCTTGGAAGCAGAAGAAGAGGCAGGTGTTGAATCAGGAGGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           CGGTCTTGGTGGGCAAGGATTCAAGAGCCTTAAACCCACTACTCTTTCCCACAGCTAATC
JMSF001G20+                                                                   AATC
                      ____________________________________________________________
consensus             CGGTCTTGGTGGGCAAGGATTCAAGAGCCTTAAACCCACTACTCTTTCCCACAGCTAATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           CAGAATCATACAAAAATTCCAATCTCTCTTGCCTCGGAACGAGTCCGGCTTGTTCCTGGA
JMSF001G20+           CAGAATCATACAAAAATTCCAATCTCTCTTGCCTCGGAACGAGTCCGGCTTGTTCCTGGA
                      ____________________________________________________________
consensus             CAGAATCATACAAAAATTCCAATCTCTCTTGCCTCGGAACGAGTCCGGCTTGTTCCTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           GTTCTCGAAACTCGGCGCGTTCTCTTTCCTCCTGGATCTGCTTGCGGAGCTCCTCCAACT
JMSF001G20+           GTTCTCGAAACTCGGCGCGTTCTCTTTCCTCCTGGATCTGCTTGCGGAGCTCCTCCAACT
                      ____________________________________________________________
consensus             GTTCTCGAAACTCGGCGCGTTCTCTTTCCTCCTGGATCTGCTTGCGGAGCTCCTCCAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           TCTTCTGTTCCGCATCATGTTTCTGCTCGGCCTTCCATACGTTCTCGATATTCCGAAGGC
JMSF001G20+           TCTTCTGTTCCGCATCATGTTTCTGCTCGGCCTTCCATACGTTCTCGATATTCCGAAGGC
                      ____________________________________________________________
consensus             TCTTCTGTTCCGCATCATGTTTCTGCTCGGCCTTCCATACGTTCTCGATATTCCGAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           TCCCCGTGTGCCATCCCTTCTTGTTCAGAAATTTCAACGCCATCGGAGGGGTTTTCGATC
JMSF001G20+           TCCCCGTGTGCCATCCCTTCTTGTTCAGAAATTTCAACGCCATCGGAGGGGTTTTCGATC
                      ____________________________________________________________
consensus             TCCCCGTGTGCCATCCCTTCTTGTTCAGAAATTTCAACGCCATCGGAGGGGTTTTCGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           TAGTCTTCCCTTAATTGGACGGTAGAAGTCGGAGCAGTGAGTATCCGCGGCGGTGGCCTC
JMSF001G20+           TAGTCTTCCCTTAATTGGACGGTAGAAGTCGGAGCAGTGAGTATCCGCGGCGGTGGCCTC
                      ____________________________________________________________
consensus             TAGTCTTCCCTTAATTGGACGGTAGAAGTCGGAGCAGTGAGTATCCGCGGCGGTGGCCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039H23+           GTGTCTCCGCCTCTATCCCTTTCGTTATCTGTCTGTGTATGAGAGACTCTTCT       
JMSF001G20+           GTGTCTCCGCCTCTATCCCTTTCGTTATCTGTCTGTGTATGAGAGACTCTTCTGGTCTCC
                      ____________________________________________________________
consensus             GTGTCTCCGCCTCTATCCCTTTCGTTATCTGTCTGTGTATGAGAGACTCTTCTGGTCTCC