Contig 010537:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001E22Sequence344010537 (3)ref|XP_006353595.1|1e-43PREDICTED: tubulin-folding cofactor E-like [Solanum tuberosum]177005774 (3)ref|XP_009606625.1|3e-08PREDICTED: tubulin-folding cofactor E isoform X1 [Nicotiana tomentosiformis]
JMSF039B24Sequence693010537 (3)ref|XP_010313057.1|2e-112PREDICTED: tubulin-folding cofactor E isoform X2 [Solanum lycopersicum]825005774 (3)ref|XP_009606626.1|3e-96PREDICTED: tubulin-folding cofactor E isoform X2 [Nicotiana tomentosiformis]
JMSF049M22Sequence369010537 (3)ref|XP_010313057.1|1e-56PREDICTED: tubulin-folding cofactor E isoform X2 [Solanum lycopersicum]178005774 (3)

Alignment

This contig is upended


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JMSF049M22+                                          AAACTAAAATCCGTATATTATTTAGCAAG
JMSF039B24+                                GTATGGTTCAAAACTAAAATCCGTATATTATTTAGCAAG
                      ____________________________________________________________
consensus                                  GTATGGTTCAAAACTAAAATCCGTATATTATTTAGCAAG
 
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JMSF049M22+           GGCATTCCACTTATATCATGTGCCATAATATTGTGTGATAGGTTCAGAGCTGCAAGACCT
JMSF039B24+           GGCATTCCACTTATATCATGTGCCATAATATTGTGTGATAGGTTCAGAGCTGCAAGACCT
                      ____________________________________________________________
consensus             GGCATTCCACTTATATCATGTGCCATAATATTGTGTGATAGGTTCAGAGCTGCAAGACCT
 
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JMSF049M22+           GGCAACTCTTTACAGATTATACCAACCTCCTCCCACTCAGATAGCAGGTTCCCAGTCAAA
JMSF039B24+           GGCAACTCTTTACAGATTATACCAACCTCCTCCCACTCAGATAGCAGGTTCCCAGTCAAA
                      ____________________________________________________________
consensus             GGCAACTCTTTACAGATTATACCAACCTCCTCCCACTCAGATAGCAGGTTCCCAGTCAAA
 
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JMSF049M22+           TCAAGCTCCTTTAAATTTGGTATAGTTGTACTAATGTGGCATGGATCTCCGGCAGAGCTG
JMSF039B24+           TCAAGCTCCTTTAAATTTGGTATAGTTGTACTAATGTGGCATGGATCTCCGGCAGAGCTG
                      ____________________________________________________________
consensus             TCAAGCTCCTTTAAATTTGGTATAGTTGTACTAATGTGGCATGGATCTCCGGCAGAGCTG
 
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JMSF049M22+           ACTCCTAAATAAGACAATGATGCACTTGTCAACTCCTCAAAATGACTCAGCTTATTCTGA
JMSF039B24+           ACTCCTAAATAAGACAATGATGCACTTGTCAACTCCTCAAAATGACTCAGCTTATTCTGA
                      ____________________________________________________________
consensus             ACTCCTAAATAAGACAATGATGCACTTGTCAACTCCTCAAAATGACTCAGCTTATTCTGA
 
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JMSF049M22+           ATCTTTTCTTTACCCAGAAGCTCAACAGTTACTCGTTTGTTGCTTGCAGAGAAAACATAC
JMSF039B24+           ATCTTTTCTTTACCCAGAAGCTCAACAGTTACTCGTTTGTTGCTTGCAGAGAAAACATAC
                      ____________________________________________________________
consensus             ATCTTTTCTTTACCCAGAAGCTCAACAGTTACTCGTTTGTTGCTTGCAGAGAAAACATAC
 
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JMSF049M22+           ATCTCATCCTCTTCTTCTTTACTGGAAGCCGTACGGTACC                    
JMSF039B24+           ATCTCATCCTCTTCTTCTTTACTGGAAGCCGTACGGTACCGGAGCTCGAGCGCCTGCAAG
JMSF001E22+                           CTTTACTGGAAGCCGTACGGTACCGGAGCTCGAGCGCCTGCAAG
                      ____________________________________________________________
consensus             ATCTCATCCTCTTCTTCTTTACTGGAAGCCGTACGGTACCGGAGCTCGAGCGCCTGCAAG
 
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JMSF039B24+           AGCGGAATGCCGACGCTGAGATTGTGCGGTCGCACAAACGACGCCGTTGTATTGCCGGCA
JMSF001E22+           AGCGGAATGCCGACGCTGAGATTGTGCGGTCGCACAAACGACGCCGTTGTATTGCCGGCA
                      ____________________________________________________________
consensus             AGCGGAATGCCGACGCTGAGATTGTGCGGTCGCACAAACGACGCCGTTGTATTGCCGGCA
 
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JMSF039B24+           GCTTCGAAGTATCGGACACCGTTGTGGCAGCCATCATGCTTCCCGTCCCCGTTGTCCCAG
JMSF001E22+           GCTTCGAAGTATCGGACACCGTTGTGGCAGCCATCATGCTTCCCGTCCCCGTTGTCCCAG
                      ____________________________________________________________
consensus             GCTTCGAAGTATCGGACACCGTTGTGGCAGCCATCATGCTTCCCGTCCCCGTTGTCCCAG
 
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JMSF039B24+           TCAACTCCGATCCACGTGCCGGAGTATCCCTCCACCGGTCCGACGTATTTCACGCTGCCG
JMSF001E22+           TCAACTCCGATCCACGTGCCGGAGTATCCCTCCACCGGTCCGACGTATTTCACGCTGCCG
                      ____________________________________________________________
consensus             TCAACTCCGATCCACGTGCCGGAGTATCCCTCCACCGGTCCGACGTATTTCACGCTGCCG
 
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JMSF039B24+           ATCCGGCGGGAGTCTCCGGCGTAGTGGACTCGTTGCCTGACCCGGAATCCGGACCCGTGC
JMSF001E22+           ATCCGGCGGGAGTCTCCGGCGTAGTGGACTCGTTGCCTGACCCGGAATCCGGACCCGTGC
                      ____________________________________________________________
consensus             ATCCGGCGGGAGTCTCCGGCGTAGTGGACTCGTTGCCTGACCCGGAATCCGGACCCGTGC
 
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JMSF039B24+           CCGGATTCTCTTGTATCGGATCTCTCGGAATCCATTGCGCTTTGAATCTTGCC       
JMSF001E22+           CCGGATTCTCTTGTATCGGATCTCTCGGAATCCATTGCGCTTTGAATCTTGCCAGTACTC
                      ____________________________________________________________
consensus             CCGGATTCTCTTGTATCGGATCTCTCGGAATCCATTGCGCTTTGAATCTTGCCAGTACTC