Contig 010536:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001D12Sequence271010536 (2)gb|KDO78579.1|3e-08hypothetical protein CISIN_1g029885mg [Citrus sinensis]678010536 (2)ref|XP_009769376.1|4e-91PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD13 [Ni

Alignment

This contig is upended


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rJMSF001D12-                      TACAACACAACATTCTTTTCATGGTCAGGATAGCTAACAAATACATTA
                      ____________________________________________________________
consensus                         TACAACACAACATTCTTTTCATGGTCAGGATAGCTAACAAATACATTA
 
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rJMSF001D12-          CATCAATCCATTGCTTTAAATAAAATTTTTAAAAAAATAAAATAAAATAACAGAGAGAGA
                      ____________________________________________________________
consensus             CATCAATCCATTGCTTTAAATAAAATTTTTAAAAAAATAAAATAAAATAACAGAGAGAGA
 
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rJMSF001D12-          GAGATGCACAAGAGAAACTACAACTTGCCAGAATGACATAAACTCCACTCTACTTTGATG
                      ____________________________________________________________
consensus             GAGATGCACAAGAGAAACTACAACTTGCCAGAATGACATAAACTCCACTCTACTTTGATG
 
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rJMSF001D12-          GAGGAACGGGAAGATTTGTTAACTTGACTTTCAACTCTATCTCCCCGGATTCCACATCGC
                      ____________________________________________________________
consensus             GAGGAACGGGAAGATTTGTTAACTTGACTTTCAACTCTATCTCCCCGGATTCCACATCGC
 
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rJMSF001D12-          GGAGCCTCAACCAAACATCTTGCACGACCTCACCGTTGACCCAGAGAATAGAGCTATCTG
                      ____________________________________________________________
consensus             GGAGCCTCAACCAAACATCTTGCACGACCTCACCGTTGACCCAGAGAATAGAGCTATCTG
 
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rJMSF001D12-          CTGCCAGACAATTGTCACTTTCAGGTATGGCCTTCCTCAAGATCGACCCTTCAGAAGAAA
                      ____________________________________________________________
consensus             CTGCCAGACAATTGTCACTTTCAGGTATGGCCTTCCTCAAGATCGACCCTTCAGAAGAAA
 
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rJMSF001D12-          TTCCAACAATTTGCCTCAATCTTGCAGCGGCCATCAATGGCTGAAGGTTAAGATGGGCAT
                      ____________________________________________________________
consensus             TTCCAACAATTTGCCTCAATCTTGCAGCGGCCATCAATGGCTGAAGGTTAAGATGGGCAT
 
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rJMSF001D12-          GACCCATCTTATCATCGGCCTTGAAGCGGTCCTTATCAAACACTTGCAGTTTCAGAACTC
                      ____________________________________________________________
consensus             GACCCATCTTATCATCGGCCTTGAAGCGGTCCTTATCAAACACTTGCAGTTTCAGAACTC
 
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rJMSF001D12-          CAGCAGGTTCAGATAAAGAGAAACTGAAGTCTTCATTCCAAACAGGATTTAGGCAGCTGT
                      ____________________________________________________________
consensus             CAGCAGGTTCAGATAAAGAGAAACTGAAGTCTTCATTCCAAACAGGATTTAGGCAGCTGT
 
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rJMSF001D12-          TTATGACCTTCGTCTTTGCAGTCTGATTTCCAAGCTTGAGAATGACATAAGGATCACTGC
JMSF001D12+                                        CCAAGCTTGAGAATGACATAAGGATCACTGC
                      ____________________________________________________________
consensus             TTATGACCTTCGTCTTTGCAGTCTGATTTCCAAGCTTGAGAATGACATAAGGATCACTGC
 
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rJMSF001D12-          TCTTGAAGTCCCGGATTACTAGCTTTTTCCCTCGTACAATCGTTATCTTTAGCTGTCCCA
JMSF001D12+           TCTTGAAGTCCCGGATTACTAGCTTTTTCCCTCGTACAATCGTTATCTTTAGCTGTCCCA
                      ____________________________________________________________
consensus             TCTTGAAGTCCCGGATTACTAGCTTTTTCCCTCGTACAATCGTTATCTTTAGCTGTCCCA
 
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rJMSF001D12-          ATGTGCCTTCCATAAGACTTTCAACTCATA                              
JMSF001D12+           ATGTGCCTTCCATAAGACTTTCAACTCATAAACCACACAAATAAAAACCAAGTAATGGGA
                      ____________________________________________________________
consensus             ATGTGCCTTCCATAAGACTTTCAACTCATAAACCACACAAATAAAAACCAAGTAATGGGA
 
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JMSF001D12+           TCTCAAAACTTTGCAGCTTTGTGCTTGTGCCAGTGATTTCAGCTTGGAAATGGACGTTTG
                      ____________________________________________________________
consensus             TCTCAAAACTTTGCAGCTTTGTGCTTGTGCCAGTGATTTCAGCTTGGAAATGGACGTTTG
 
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JMSF001D12+           GGTTCTCTTTCCTGTCTGGTCTTTTCTTGAAAAACACAGGGTGATATGATTCTTTTTCTC
                      ____________________________________________________________
consensus             GGTTCTCTTTCCTGTCTGGTCTTTTCTTGAAAAACACAGGGTGATATGATTCTTTTTCTC