Contig 010535:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS142G08Sequence625010535 (3)gb|KJB25820.1|3e-52hypothetical protein B456_004G210900 [Gossypium raimondii]
JMFS168H07Sequence616010535 (3)gb|KJB25820.1|8e-47hypothetical protein B456_004G210900 [Gossypium raimondii]
JMSF049N17Sequence674010535 (3)ref|XP_009626688.1|1e-72PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Nicotiana722016213ref|XP_009779007.1|2e-74PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Nicotiana

Alignment

This contig is upended


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JMSF049N17+                                   TCTCCAGAAACCGGTGTAGATGACTTTATGGATGGA
                      ____________________________________________________________
consensus                                     TCTCCAGAAACCGGTGTAGATGACTTTATGGATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF049N17+           TCATTGGTAACATACACTTTAAGTCCAAGCTCCCCTCGAACGTGTGAGAACACGCTGCGC
                      ____________________________________________________________
consensus             TCATTGGTAACATACACTTTAAGTCCAAGCTCCCCTCGAACGTGTGAGAACACGCTGCGC
 
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JMSF049N17+           TTCTCGAGAGGATAGTGCAACACAACAGAATCTGGCAAAGGCACAAACGAGGTTCCACTA
JMFS142G08+                     GATAGTGCAACACAACAGAATCTGGCAAAGGCACAAACGAGGTTCCACTA
JMFS168H07+                                                       AAACGAGGTTCCACTA
                      ____________________________________________________________
consensus             TTCTCGAGAGGATAGTGCAACACAACAGAATCTGGCAAAGGCACAAACGAGGTTCCACTA
 
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JMSF049N17+           ATCGTAACCTTCCCAAGAAACGACCTCGACTCAGTTGATCTTATGGTGTTATAGACATAG
JMFS142G08+           ATCGTAACCTTCCCAAGAAACGACCTCGACTCAGTTGATCTTATGGTGTTATAGACATAG
JMFS168H07+           ATCGTAACCTTCCCAAGAAACGACCTCGACTCAGTTGATCTTATGGTGTTATAGACATAG
                      ____________________________________________________________
consensus             ATCGTAACCTTCCCAAGAAACGACCTCGACTCAGTTGATCTTATGGTGTTATAGACATAG
 
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JMSF049N17+           GCTTCGAGTGCACGAACGTGGAGGGTCGAAGGATCGGATATGTTGAAGTAGAAACTCTCG
JMFS142G08+           GCTTCGAGTGCACGAACGTGGAGGGTCGAAGGATCGGATATGTTGAAGTAGAAACTCTCG
JMFS168H07+           GCTTCGAGTGCACGAACGTGGAGGGTCGAAGGATCGGATATGTTGAAGTAGAAACTCTCG
                      ____________________________________________________________
consensus             GCTTCGAGTGCACGAACGTGGAGGGTCGAAGGATCGGATATGTTGAAGTAGAAACTCTCG
 
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JMSF049N17+           TTCCATACAGGATGCAGATCTTTTTCCTTTATCGTGGTCCGAAATTGCTGGCCATCAAAG
JMFS142G08+           TTCCATACAGGATGCAGATCTTTTTCCTTTATCGTGGTCCGAAATTTCTGGCCATCAAAG
JMFS168H07+           TTCCATACAGGATGCAGATCTTTTTCCTTTATCGTGGTCCGAAATTTCTGGCCATCAAAG
                      ____________________________________________________________
consensus             TTCCATACAGGATGCAGATCTTTTTCCTTTATCGTGGTCCGAAATTTCTGGCCATCAAAG
 
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JMSF049N17+           TAGAGTTCCACGAAAGCATTGGATGAACCTTGCCCATCTTTAGGTAGAAGGTTATGTGCA
JMFS142G08+           TAGAGTTCCACGAAAGCATTGGATGAACCTTGCCCATCTTTAGGTAGAAGGTTATGTGCA
JMFS168H07+           TAGAGTTCCACGAAAGCATTGGATGAACCTTGCCCATCTTTAGGTAGAAGGTTATGTGCA
                      ____________________________________________________________
consensus             TAGAGTTCCACGAAAGCATTGGATGAACCTTGCCCATCTTTAGGTAGAAGGTTATGTGCA
 
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JMSF049N17+           CTTACCACATCCACCCCCAACTTCAGGTTGCTCATGTTCATCATTGCAGCTCAGATTTCA
JMFS142G08+           CTTACCACATCCACCCCCAACTTCAGGTTGCTCATGTTCATCATTGCAGCTCAGATTTCA
JMFS168H07+           CTTACCACATCCACCCCCAACTTCAGGTTGCTCATGTTCATCATTGCAGCTCAGATTTCA
                      ____________________________________________________________
consensus             CTTACCACATCCACCCCCAACTTCAGGTTGCTCATGTTCATCATTGCAGCTCAGATTTCA
 
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JMSF049N17+           ATCAGAAGAAACTATAAGAACAATCTCCAAACC                           
JMFS142G08+           ATCAGAAGAAACTATAAGAACAATCTCCAAACCAGCTTCTATTTTCTATCAGCTGAAGAC
JMFS168H07+           ATCAGAAGAAACTATAAGAACAATCTCCAAACCAGCTTCTATTTTCTATCAGCTGAAGAC
                      ____________________________________________________________
consensus             ATCAGAAGAAACTATAAGAACAATCTCCAAACCAGCTTCTATTTTCTATCAGCTGAAGAC
 
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JMFS142G08+           TTGGCACATCCAGAGAGCCAGAAAGGTGCAAAGAAATGGCAGTAATTAGGATTGGGGACG
JMFS168H07+           TTGGCACATCCAGAGAGCCAGAAAGGTGCAAAGAAATGGCAGTAATTAGGATTGGGGACG
                      ____________________________________________________________
consensus             TTGGCACATCCAGAGAGCCAGAAAGGTGCAAAGAAATGGCAGTAATTAGGATTGGGGACG
 
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JMFS142G08+           GAGGGCGCGTGGAGTCACCACAGAGGACAAGAAAGGGAGAGAGAGAGGCTGCTATAATGC
JMFS168H07+           GAGGGCGCGTGGAGTCACCACAGAGGACAAGAAAGGGAGAGAGAGAGGCTGCTATAATGC
                      ____________________________________________________________
consensus             GAGGGCGCGTGGAGTCACCACAGAGGACAAGAAAGGGAGAGAGAGAGGCTGCTATAATGC
 
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JMFS142G08+           AGCCATTGCTGTGTACTGACAAGCTTTCTTTGTGTGTGCTACAACTTAAAAATGCATGAA
JMFS168H07+           AGCCATTGCTGTGTACTGACAAGCTTTCTTTGTGTGTGCTACAACTTAAAAATGCATGAA
                      ____________________________________________________________
consensus             AGCCATTGCTGTGTACTGACAAGCTTTCTTTGTGTGTGCTACAACTTAAAAATGCATGAA
 
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JMFS142G08+           ATATATACAAAGATTATGTGCTATATATGAATGTT                         
JMFS168H07+           ATATATACAAAGATTATGTGCTATATATGAATGTTTCATATATACAGAGGGGGAGAGAGA
                      ____________________________________________________________
consensus             ATATATACAAAGATTATGTGCTATATATGAATGTTTCATATATACAGAGGGGGAGAGAGA