Contig 010527:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019D05Sequence476010527 (6)ref|XP_010104289.1|1e-14Transcriptional corepressor SEUSS [Morus notabilis] gb|EXB99574.1| Transcription682011040 (2)ref|XP_009625647.1|7e-09PREDICTED: transcriptional corepressor SEUSS-like [Nicotiana tomentosiformis]
JMFS015C09Sequence555010527 (6)ref|XP_010104289.1|2e-26Transcriptional corepressor SEUSS [Morus notabilis] gb|EXB99574.1| Transcription
JMFS059H02Sequence627010527 (6)ref|XP_009767968.1|4e-30PREDICTED: transcriptional corepressor SEUSS-like isoform X2 [Nicotiana sylvest
JMFS077B05Sequence688010527 (6)ref|XP_006356714.1|2e-40PREDICTED: transcriptional corepressor SEUSS-like [Solanum tuberosum]
JMFS155G10Sequence630010527 (6)gb|KDP43065.1|6e-29hypothetical protein JCGZ_25251 [Jatropha curcas]
JMSF048D08Sequence710010527 (6)ref|XP_002520244.1|5e-34Transcriptional corepressor SEUSS, putative [Ricinus communis] gb|EEF42030.1| Tr808011040 (2)ref|XP_009625647.1|5e-20PREDICTED: transcriptional corepressor SEUSS-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS059H02+ TCGGCGTGCACACATTCCAGGCTCATAATATGGTTTGNCTGGAGATCTTAAAGCCATA
                      ____________________________________________________________
consensus TCGGCGTGCACACATTCCAGGCTCATAATATGGTTTGNCTGGAGATCTTAAAGCCATA
 
. : . : . : . : . : . :
JMFS059H02+ TTTGGTGGTTGATATTGTGGCTGAAGTGGATTTCTTTGTTGAGGCATTGCCTTCAAGAGC
                      ____________________________________________________________
consensus TTTGGTGGTTGATATTGTGGCTGAAGTGGATTTCTTTGTTGAGGCATTGCCTTCAAGAGC
 
. : . : . : . : . : . :
JMFS059H02+ TGATGTTGCTGTTGCTGTTGCTGTTGGAACTGCATAAGTCTCTGTTGATGCAAAAGCTGG
                      ____________________________________________________________
consensus TGATGTTGCTGTTGCTGTTGCTGTTGGAACTGCATAAGTCTCTGTTGATGCAAAAGCTGG
 
. : . : . : . : . : . :
JMFS059H02+ GCCATGGCAGCAGCTTGAGGGGAGGACCTAGACATTTGAAGTAATTGCTGCTGCTGCTGT
                      ____________________________________________________________
consensus GCCATGGCAGCAGCTTGAGGGGAGGACCTAGACATTTGAAGTAATTGCTGCTGCTGCTGT
 
. : . : . : . : . : . :
JMFS059H02+ TGTTGCTGATGTTGATGCTGATGTTGCTGTATAAATAAGGAAGGGTCAGAATGCTGTGGT
                      ____________________________________________________________
consensus TGTTGCTGATGTTGATGCTGATGTTGCTGTATAAATAAGGAAGGGTCAGAATGCTGTGGT
 
. : . : . : . : . : . :
JMFS059H02+ TCAATTTTGACAGGTGTCAGGCCTCTCATGTTCTGTAGCTGTTGTGGTTCCAGTTTCATT
                      ____________________________________________________________
consensus TCAATTTTGACAGGTGTCAGGCCTCTCATGTTCTGTAGCTGTTGTGGTTCCAGTTTCATT
 
. : . : . : . : . : . :
JMFS059H02+ GTGGCAAGATTCCGTAAAGCTTGTAAGTGCTGGGGAGGTTGAGTAGACACCTGTGAGGCC
                      ____________________________________________________________
consensus GTGGCAAGATTCCGTAAAGCTTGTAAGTGCTGGGGAGGTTGAGTAGACACCTGTGAGGCC
 
. : . : . : . : . : . :
JMFS059H02+ AAACCTCGAATGTTTTCTATCTGTTGTGGTTCCAATTTCACTGTTGTCAGGTTTTGCGAA
JMFS077B05+ AA
                      ____________________________________________________________
consensus AAACCTCGAATGTTTTCTATCTGTTGTGGTTCCAATTTCACTGTTGTCAGGTTTTGCGAA
 
. : . : . : . : . : . :
JMFS059H02+ GCTTGCAGCTGTGGAATTTGATCATTGGTAACCTGTGGCTCTAGTTTAACAGAAGCAACA
JMFS077B05+ GCTTGCAGCTGTGGAATTGACTCATTGGTAACCTGTGGCTCTAGTTTAACAGAAGCAACA
                      ____________________________________________________________
consensus GCTTGCAGCTGTGGAATTTGCTCATTGGTAACCTGTGGCTCTAGTTTAACAGAAGCAACA
 
. : . : . : . : . : . :
JMFS059H02+ CCTCCTAATCCACTTCGCATTGAATGAAATTGCTGCTGCTGTGTCTGGGAATTGTCAGGG
JMFS077B05+ CCTCCTAATCCACTTCGCATTGAATGAAATTGCTGCTGCTGTGTCTGGGAATTGTCAGGG
                      ____________________________________________________________
consensus CCTCCTAATCCACTTCGCATTGAATGAAATTGCTGCTGCTGTGTCTGGGAATTGTCAGGG
 
. : . : . : . : . : . :
JMFS059H02+ GTAGAAAACTGTGGCAGCTGTTGATTATG
JMSF048D08+ TGGGTT
JMFS077B05+ GTAGAAAACTGTGGCAGCTGTTGATTATGCTGGAAGCTCTGGGGATCAAGCTGTTGGGTT
                      ____________________________________________________________
consensus GTAGAAAACTGTGGCAGCTGTTGATTATGCTGGAAGCTCTGGGGATCAAGCTGTTGGGTT
 
. : . : . : . : . : . :
JMSF048D08+ TGTTGGTCTGTCAACATTTGGTTTCCAGAAGTATTAGTAAATTGTTGCCCCTGAACTTGA
JMFS077B05+ TGTTGGTCTGTCAACATTTGGTTTCCAGAAGTATTAGTAAATTGTTGCCCCTGAACTTGA
JMFS155G10+ AGTATTAGTAAATTGTTGCCCCTGAACTTGA
                      ____________________________________________________________
consensus TGTTGGTCTGTCAACATTTGGTTTCCAGAAGTATTAGTAAATTGTTGCCCCTGAACTTGA
 
. : . : . : . : . : . :
JMSF048D08+ GCAGCTGAATTAGAATTTGTGGACATGGACACTGAAACAAATGATGAAGGCGGAGAATTA
JMFS077B05+ GCAGCTGAATTAGAATTTGTGGACATGGACACTGAAACAAATGATGAAGGCGGAGAATTA
JMFS155G10+ GCAGCTGAATTAGAATTTGTGGACATGGACACTGAAACAAATGATGAAGGCGGAGAATTA
                      ____________________________________________________________
consensus GCAGCTGAATTAGAATTTGTGGACATGGACACTGAAACAAATGATGAAGGCGGAGAATTA
 
. : . : . : . : . : . :
JMFS015C09+ ATTTCCAACACTAGAAAGTGGATCAGATTCGGCCCCGTTGTCAATAAGA
JMSF048D08+ AATCCCATTCCATTTCCAACACTAGAAAGTGGATCAGATTCGGCCCCGTTGTCAATAAGA
JMFS077B05+ AATCCCATTCCATTTCCAACACTAGAAAGTGGATCAGATTCGGCCCCGTTGTCAATAAGA
JMFS155G10+ AATCCCATTCCATTTCCAACACTAGAAAGTGGATCAGATTCGGCCCCGTTGTCAATAAGA
                      ____________________________________________________________
consensus AATCCCATTCCATTTCCAACACTAGAAAGTGGATCAGATTCGGCCCCGTTGTCAATAAGA
 
. : . : . : . : . : . :
JMFS015C09+ CCCCTCTGAGTATTCCCAGGATTAGGACCACCATTTCCAAAAGACTGATGGAGTAGAGAT
JMFF019D05+ TTTCCAAAAGACTGATGGAGTAGAGAT
JMSF048D08+ CCCCTCTGAGTATTCCCAGGATTAGGACCACCATTTCCAAAAGACTGATGGAGTAGAGAT
JMFS077B05+ CCCCTCTGAGTATTCCCAGGATTAGGACCACCATTTCCAAAAGACTGATGGAGTAGAGAT
JMFS155G10+ CCCCTCTGAGTATTCCCAGGATTAGGACCACCATTTCCAAAAGACTGATGGAGTAGAGAT
                      ____________________________________________________________
consensus CCCCTCTGAGTATTCCCAGGATTAGGACCACCATTTCCAAAAGACTGATGGAGTAGAGAT
 
. : . : . : . : . : . :
JMFS015C09+ GTAACATTAGGACCATTCCCAAGCATATTCATGTTACCAAATTGTGTCCGTGGAGATGCC
JMFF019D05+ GTAACATTAGGACCATTCCCAAGCATATTCATGTTACCAAATTGTGTCCGTGGAGATGCC
JMSF048D08+ GTAACATTAGGACCATTCCCAAGCATATTCATGTTACCAAATTGTGTCCGTGGAGATGCC
JMFS077B05+ GTAACATTAGGACCATTCCCAAGCATATTCATGTTACCAAATTGTGTCCGTGGAGATGCC
JMFS155G10+ GTAACATTAGGACCATTCCCAAGCATATTCATGTTACCAAATTGTGTCCGTGGAGATGCC
                      ____________________________________________________________
consensus GTAACATTAGGACCATTCCCAAGCATATTCATGTTACCAAATTGTGTCCGTGGAGATGCC
 
. : . : . : . : . : . :
JMFS015C09+ ATAGAGGGGAAACCACCCTGTGATGGCATAGCACCCCCCTGACCACCCAACATAGCAGAA
JMFF019D05+ ATAGAGGGGAAACCACCCTGTGATGGCATAGCACCCCCCTGACCACCCAACATAGCAGAA
JMSF048D08+ ATAGAGGGGAAACCACCCTGTGATGGCATAGCACCCCCCTGACCACCCAACATAGCAGAA
JMFS077B05+ ATAGAGGGGAAACCACCCTGTGATGGCATAGCACCCCCCTGACCACCCAACATAGCAGAA
JMFS155G10+ ATAGAGGGGAAACCACCCTGTGATGGCATAGCACCCCCCTGACCACCCAACATAGCAGAA
                      ____________________________________________________________
consensus ATAGAGGGGAAACCACCCTGTGATGGCATAGCACCCCCCTGACCACCCAACATAGCAGAA
 
. : . : . : . : . : . :
JMFS015C09+ TTCGATCGCAGTAGTGAAGGTGGGACAGACTGGGAGTTACCAAGTGTATTAGAAG-CCCC
JMFF019D05+ TTCGATCGCAGTAGTGAAGGTGGGACAGACTGGGAGTTACCAAGTGTATTAGAAG-CCCC
JMSF048D08+ TTCGATCGCAGTAGTGAAGGTGGGACAGACTGGGAGTTACCAAGTGTATTAGAAG-CCCC
JMFS077B05+ TTCGATCGCAGTAGTGAAGGTGGGACAGACTGGGAGTTACCAAGTGTATTAGAAGNCCCC
JMFS155G10+ TTCGATCGCAGTAGTGAAGGTGGGACAGACTGGGAGTTACCAAGTGTATTAGAAG-CCCC
                      ____________________________________________________________
consensus TTCGATCGCAGTAGTGAAGGTGGGACAGACTGGGAGTTACCAAGTGTATTAGAAG-CCCC
 
. : . : . : . : . : . :
JMFS015C09+ TCGCGGTACCATTTTCCTTACAAAAGCCGATTAACAGTCAACACCACAGCGTCGGAGCTC
JMFF019D05+ TCGCGGTACCATTTTCCTTACAAAAGCCGATTAACAGTCAACACCACAGCGTCGGAGCTC
JMSF048D08+ TCGCGGTACCATTTTCCTTACAAAAGCCGATTAACAGTCAACACCACAGCGTCGGAGCTC
JMFS077B05+ TCGCGGTACCATTTTCCTTACAAAAGCCGATTAACAGTCAACACCACAGCGTCGGAGCTC
JMFS155G10+ TCGCGGTACCATTTTCCTTACAAAAGCCGATTAACAGTCAACACCACAGCGTCGGAGCTC
                      ____________________________________________________________
consensus TCGCGGTACCATTTTCCTTACAAAAGCCGATTAACAGTCAACACCACAGCGTCGGAGCTC
 
. : . : . : . : . : . :
JMFS015C09+ AACC
JMFF019D05+ AACC
JMSF048D08+ AACC
JMFS077B05+ AACCAATTGACAAGAATCAAAC
JMFS155G10+ AACCAATTGACAAGAATCAAACATACTACTACATTCACTTCTTTTCTCCTTTAACATTAG
                      ____________________________________________________________
consensus AACCAATTGACAAGAATCAAACATACTACTACATTCACTTCTTTTCTCCTTTAACATTAG
 
. : . : . : . : . : . :
JMFS155G10+ TAACACAGATACTAGGAACATACGTATTTCTGTCATCTGTGTGCATACATGGATACAATA
                      ____________________________________________________________
consensus TAACACAGATACTAGGAACATACGTATTTCTGTCATCTGTGTGCATACATGGATACAATA
 
. : . : . : . : . : . :
JMFS155G10+ ATATTTAATAAAATTATGAGTTTAAATGGAAGCTCTGAAGTTCAGTAAAGTCGTAGTCAC
                      ____________________________________________________________
consensus ATATTTAATAAAATTATGAGTTTAAATGGAAGCTCTGAAGTTCAGTAAAGTCGTAGTCAC