| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027M16 | Sequence | 528 | 004582 (3) | ref|XP_006345991.1| | 193 | PREDICTED: uncharacterized protein LOC102591105, partial [Solanum tuberosum] | 649 | 010520 (4) | gb|EYU39518.1| | 2e-17 | hypothetical protein MIMGU_mgv1a007478mg [Erythranthe guttata] |
| JMFF027M20 | Sequence | 439 | 010520 (4) | ||||||||
| JMFF032G13 | Sequence | 472 | 004582 (3) | ref|XP_009625035.1| | 166 | PREDICTED: uncharacterized protein LOC104115988 [Nicotiana tomentosiformis] | 590 | 010520 (4) | gb|EYU39518.1| | 5e-14 | hypothetical protein MIMGU_mgv1a007478mg [Erythranthe guttata] |
| JMFS146B11 | Sequence | 617 | 010520 (4) | ref|XP_009792812.1| | 92.4 | PREDICTED: uncharacterized protein LOC104239795 [Nicotiana sylvestris] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF027M16+ C
____________________________________________________________
consensus C
. : . : . : . : . : . :
rJMFF027M16+ TTCACGCAAAAATCCTGCAATGGCGGCGATCCATGACCCCAGACATGATGTNTGATGTCA
JMFS146B11+ ACATGATGTCTGATGTCA
____________________________________________________________
consensus TTCACGCAAAAATCCTGCAATGGCGGCGATCCATGACCCCAGACATGATGTCTGATGTCA
. : . : . : . : . : . :
rJMFF027M16+ ACGGCGAAGAGTTTCCCGGGAAGCCTGGCTCCATNTGCAACGGCTCAATGGTGAACGGCG
rJMFF032G13+ GAAGAGTTTCCCGGGAAGCCTGGCTCCATNTGCAACGGCTCAATGGTGAACGGCG
JMFS146B11+ ACGGCGAAGAGTTTCCCGGGAAGCCTGGCTCCATCTGCAACGGCTCAATGGTGAACGGCG
____________________________________________________________
consensus ACGGCGAAGAGTTTCCCGGGAAGCCTGGCTCCATCTGCAACGGCTCAATGGTGAACGGCG
. : . : . : . : . : . :
rJMFF027M16+ GATCGATGGTGAATGGCGGATCGATGGTGAACTNCGGCTCGGAAGTTTGCTCCGACGTGG
rJMFF032G13+ GATCGATGGTGAATGGCGGATCGATGGTGAACTACGGCTNGGAAGTTTGCTCCGACGTGG
JMFS146B11+ GATCGATGGTGAATGGCGGATCGATGGTGAACTACGGCTCGGAAGTTTGCTCCGACGTGG
____________________________________________________________
consensus GATCGATGGTGAATGGCGGATCGATGGTGAACTACGGCTCGGAAGTTTGCTCCGACGTGG
. : . : . : . : . : . :
rJMFF027M16+ GACCGTCGGCCTCCGTTGTGGCGGCGGAGATAGCTCAGAGTTGGCAGGCGTCAGCGGCGC
rJMFF027M20+ CGGCNC
rJMFF032G13+ GACCGTCGGCCTCCGTTGTGGCGGCGGAGATAGCTCAGAGTTGGCAGGCGTCAGCGGCGC
JMFS146B11+ GACCGTCGGCCTCCGTTGTGGCGGCGGAGATAGCTCAGAGTTGGCAGGCGTCAGCGGCGC
____________________________________________________________
consensus GACCGTCGGCCTCCGTTGTGGCGGCGGAGATAGCTCAGAGTTGGCAGGCGTCAGCGGCGC
. : . : . : . : . : . :
rJMFF027M16+ CGAGGAAGGAGATAATGGAAAGGGGAGTCGGGGATAGCATGGTACTGCCGGCGAATTTGA
rJMFF027M20+ CGAGGAAGGAGATNATGGAAAGGGGANTNGGGGATAGCNTGGTTCTNCCGGGGAATTTNA
rJMFF032G13+ CGAGGAAGGAGATAATGGAAAGGGGAGTCGGGGATAGCATGGTNCTGCCGGNGAATTTGA
JMFS146B11+ CGAGGAAGGAGATAATGGAAAGGGGAGTCGGGGATAGCATGGTACTGCCGGCGAATTTGA
____________________________________________________________
consensus CGAGGAAGGAGATAATGGAAAGGGGAGTCGGGGATAGCATGGTACTGCCGGCGAATTTGA
. : . : . : . : . : . :
rJMFF027M16+ CNCCGGAAGAGGCGAAGAGGCGGCGTGAGGCGGCGGAGGACGATGAAAATGAGGAGGAGA
rJMFF027M20+ CNCCNGAAAANGCGAANANGCGGCNTNANGCGGCGGANGACGATNAAAATGAGGAGGAGA
rJMFF032G13+ CNCCGGAAGAGGCGAAGAGGCGGCGTGAGGCGGCGGAGGACGATGAAAATGAGGAGGAGA
JMFS146B11+ CGCCGGAAGAGGCGAAGAGGCGGCGTGAGGCGGCGGAGGACGATGAAAATGAGGAGGAGA
____________________________________________________________
consensus CGCCGGAAGAGGCGAAGAGGCGGCGTGAGGCGGCGGAGGACGATGAAAATGAGGAGGAGA
. : . : . : . : . : . :
rJMFF027M16+ TGGAGATGATTCCGAAGAACNCCGGGCGGCGGAAACCAGACAATGGCANGTATTCGTGCT
rJMFF027M20+ TGGAGATGATTNCGAAGAACNCCGGGCGGNGGAAACCNGACNATGGCANGTNTTTGTGNT
rJMFF032G13+ TGGAGATGATTCCGAAGAACGCCGGGCGGCGGAAACCAGACAATGGCANGTATTCGTGCT
JMFS146B11+ TGGAGATGATTCCGAAGAACGCCGGGCGGCGGAAACCAGACAATGGCATGTATTCGTGCT
____________________________________________________________
consensus TGGAGATGATTCCGAAGAACGCCGGGCGGCGGAAACCAGACAATGGCATGTATTCGTGCT
. : . : . : . : . : . :
rJMFF027M16+ TCGTNTATGGATTTCAGTTCACCATTGTNTGCGGAGNTAATAATAATCCCCCCAAAACCA
rJMFF027M20+ TTGTTTANGGATTTCANTTCNCCNTTGTTTGNGGANGTAATAATNATCCCCCCNAAACCN
rJMFF032G13+ TNGTNTATGGATTTCAGTTCNCCATTGTNTGCGGAGNTAATAATAATCCCCCCAAAACCA
JMFS146B11+ TCGTCTATGGATTTCAGTTCACCATTGTCTGCGGAGCTAATAATAATCCCCCCAAAACCA
____________________________________________________________
consensus TCGTTTATGGATTTCAGTTCACCATTGTTTGCGGAGGTAATAATAATCCCCCCAAAACCA
. : . : . : . : . : . :
rJMFF027M16+ AAAAGAAGAAGTCAGACAAAAGTTNTGATTAATTTTTCTTTGTTTTTGTTGCTTTTGGCA
rJMFF027M20+ AAAANAAGAANTCAGACAAAANTTTTGAATAANTTTTNTTTGTTTTTGNTGCTTTTGGCN
rJMFF032G13+ AAAAGAAGAAGTCAGACAAAAGTTTTGATTAATTTTTCTTTGTTTTTGTTGCTTTTGGCA
JMFS146B11+ AAAAGAAGAAGTCAGACAAAAGTTCTGATTAATTTTTCTTTGTTTTTGTTGCTTTTGGCA
____________________________________________________________
consensus AAAAGAAGAAGTCAGACAAAAGTTTTGATTAATTTTTCTTTGTTTTTGTTGCTTTTGGCA
. : . : . : . : . : . :
rJMFF027M16+ TTTGAAACAACAGAGACCCCCTCAGTTG-TTTTTTTTTTTCTTAATACTTATTTTGTACT
rJMFF027M20+ NTTGAAACAACNNANACCCCCTCANTTGTTTTTTTTTTTTCTTAATACTTATTTTGTACT
rJMFF032G13+ TTTGAAACAACAGAGACCCCCTCAGTTG-TTTTTTTTTTTCTTAATACTTATTTTGTACT
JMFS146B11+ TTTGAAACAACAGAGACCCCCTCAGTTG-TTTTTTTTTTTCTTAATACTTATTTTGTACT
____________________________________________________________
consensus TTTGAAACAACAGAGACCCCCTCAGTTG-TTTTTTTTTTTCTTAATACTTATTTTGTACT
. : . : . : . : . : . :
rJMFF027M16+ CAAAGTTTCAAACGAAGAAATTNTGAGACAGAAAAAAAA
rJMFF027M20+ CAAAGTTTCAAACGAAGAAATTTNGAGACAGAAAAAAAA
rJMFF032G13+ CAAAGTTTCAAACGAAGAAATTTTGAGACAGAAAAAAAA
JMFS146B11+ CAAAGTTTCAAACGAAGAAATTTTGAGACAGAAAAAAAATTGGAGAAGAGAATTATTAAT
____________________________________________________________
consensus CAAAGTTTCAAACGAAGAAATTTTGAGACAGAAAAAAAATTGGAGAAGAGAATTATTAAT