Contig 010518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS145D05Sequence247010518 (2)
JMFS152B07Sequence626010518 (2)ref|XP_009757870.1|1e-22PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Nicotiana sylves

Alignment

This contig is upended


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JMFS152B07+                            GGAACAAAGCGAGCAACTGGAACACTTCTCACAACACGCTCAT
                      ____________________________________________________________
consensus                              GGAACAAAGCGAGCAACTGGAACACTTCTCACAACACGCTCAT
 
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JMFS152B07+           CCTCCAAATCAATTACACTAGTAGCAATTTGGTCTCCCTTATTCTCTGCGGTGTGATTAT
                      ____________________________________________________________
consensus             CCTCCAAATCAATTACACTAGTAGCAATTTGGTCTCCCTTATTCTCTGCGGTGTGATTAT
 
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JMFS152B07+           TTTCCAACTCTAAAAATTTATAGGGAAGTGTAGGATCCCTAGCATAGCATGAATGTATGT
                      ____________________________________________________________
consensus             TTTCCAACTCTAAAAATTTATAGGGAAGTGTAGGATCCCTAGCATAGCATGAATGTATGT
 
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JMFS152B07+           AACGCCTGCTTTGAGCCATAAGCTCCTCAATTTCTTTTGTCGCACTCCCATACTTTCCAC
                      ____________________________________________________________
consensus             AACGCCTGCTTTGAGCCATAAGCTCCTCAATTTCTTTTGTCGCACTCCCATACTTTCCAC
 
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JMFS152B07+           ATTCCAAACTTTCCCATAAATTGGACATAGAATAGGGATCAGAATAGTCCAAAATTCCTG
                      ____________________________________________________________
consensus             ATTCCAAACTTTCCCATAAATTGGACATAGAATAGGGATCAGAATAGTCCAAAATTCCTG
 
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JMFS152B07+           AAGAGCGTTTTAGGAGTCTCTCTTCAAATTCCTCGCGCCAGCATAAAGAAGATATTTTGT
                      ____________________________________________________________
consensus             AAGAGCGTTTTAGGAGTCTCTCTTCAAATTCCTCGCGCCAGCATAAAGAAGATATTTTGT
 
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JMFS152B07+           TAACCGGAACTTCACTGGTTCTCATCCTTTTCCTTCCCTTGGGAAAAGAATCCACTGCCG
JMFS145D05+                                                                ACTGCCG
                      ____________________________________________________________
consensus             TAACCGGAACTTCACTGGTTCTCATCCTTTTCCTTCCCTTGGGAAAAGAATCCACTGCCG
 
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JMFS152B07+           GAAACATTGTTGCAATCGGGGTAGGATAAATGCTCCCGAAGCCTTCCGAACCTGAAGCTC
JMFS145D05+           GAAACATTGTTGCAATCGGGGTAGGATAAATGCTCCCGAAGCCTTCCGAACCTGAAGCTC
                      ____________________________________________________________
consensus             GAAACATTGTTGCAATCGGGGTAGGATAAATGCTCCCGAAGCCTTCCGAACCTGAAGCTC
 
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JMFS152B07+           CCATGATCACTAAAATTTCACCGGAAAGTTAATGCGATTAATGAAATTGGGGTTAAGAAC
JMFS145D05+           CCATGATCACTAAAATTTCACCGGAAAGTTAATGCGATTAATGAAATTGGGGTTAAGAAC
                      ____________________________________________________________
consensus             CCATGATCACTAAAATTTCACCGGAAAGTTAATGCGATTAATGAAATTGGGGTTAAGAAC
 
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JMFS152B07+           ATCTACACACTTCTTTCGGCAATATCATAACTTTGAAACAACAATTAAGATCACGAAAGG
JMFS145D05+           ATCTACACACTTCTTTCGGCAATATCATAACTTTGAAACAACAATTAAGATCACGAAAGG
                      ____________________________________________________________
consensus             ATCTACACACTTCTTTCGGCAATATCATAACTTTGAAACAACAATTAAGATCACGAAAGG
 
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JMFS152B07+           TATTTACACAATTGTTACGGAGTAATAAAAACCCTAAGTTCCA                 
JMFS145D05+           TATTTACACAATTGTTACGGAGTAATAAAAACCCTAAGTTCCAGAAATGAAATTAGGAAA
                      ____________________________________________________________
consensus             TATTTACACAATTGTTACGGAGTAATAAAAACCCTAAGTTCCAGAAATGAAATTAGGAAA