Contig 010513:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+                                             AAGCACTTACTTATCCCCAAATCCAC
JMFS091A02+                                                          TCCCCAAATCCAC
                      ____________________________________________________________
consensus                                               AAGCACTTACTTATCCCCAAATCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           CAACTTTNCAAGAACTTGGGGAGCCAGCAACTATACTTTCAATAACTTGAAGACCAGAAA
JMFS091A02+           CAAACTTTCAAGAACTTGGGGAGCCAGCAACTATACTTTCAATAACTTGAAGACCAGAAA
JMFS013C04+                                   CAGCAACTATACTTTCAATAACTTGAAGACCAGAAA
                      ____________________________________________________________
consensus             CAACTTTTCAAGAACTTGGGGAGCCAGCAACTATACTTTCAATAACTTGAAGACCAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           TTTTTCATCATCATCAGATTAATATTTCAACATCATCACTTATCACTTTATCATCTCAAT
JMFS091A02+           TTTTTCATCATCATCAGATTAATATTTCAACATCATCACTTATCACTTTATCATCTCAAT
JMFS013C04+           TTTTTCATCATCATCAGATTAATATTTCAACATCATCACTTATCACTTTATCATCTCAAT
JMFS079D11+              TTCATCATCATCAGATTAATATTTCAACATCATCACTTATCACTTTATCATCTCAAT
JMFS050D04+                                     TCAACATCATCACTTATCACTNTATCATCTCAAT
JMFS065D11+                       ATCAGATTAATATTTCAACATCATCACTTATCACTTTATCATCTCAAT
JMFS142G09+                                               CACTTATCACTTTATCATCTCAAT
                      ____________________________________________________________
consensus             TTTTTCATCATCATCAGATTAATATTTCAACATCATCACTTATCACTTTATCATCTCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
JMFS091A02+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
JMFS013C04+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
JMFS079D11+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
JMFS050D04+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
JMFS065D11+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
JMFS142G09+           TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
                      ____________________________________________________________
consensus             TTTTCAGATAACAACTCCAACCCAAAATCAAGAGATTAAAATTCACGACTTTCCGTAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
JMFS091A02+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
JMFS013C04+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
JMFS079D11+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
JMFS050D04+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
JMFS065D11+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
JMFS142G09+           TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
                      ____________________________________________________________
consensus             TTAAACCAAAAAAGTCAAAATCTGCAGTGAACAGTCGCTTTCATCTGCTCCGAGTTAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
JMFS091A02+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
JMFS013C04+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
JMFS079D11+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
JMFS050D04+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
JMFS065D11+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
JMFS142G09+           GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
                      ____________________________________________________________
consensus             GAATTGAATCCAAACAAGCAACCTTTTTGGGGAAAAATAGGGAAAAAGAGATAAAAGGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
JMFS091A02+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
JMFS013C04+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
JMFS079D11+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
JMFS050D04+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
JMFS065D11+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
JMFS142G09+           CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
                      ____________________________________________________________
consensus             CCTTGAAATGATATAGAGATCAAAACTCTGCCTCTATAACAGAAAAACAACCATTCCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
JMFS091A02+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
JMFS013C04+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
JMFS079D11+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
JMFS050D04+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
JMFS065D11+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
JMFS142G09+           GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
                      ____________________________________________________________
consensus             GTGAAATTCCCAGAAATAGAAGAATACCCAGTGCTCCAAACTAGAAGAATTCACTGCAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
JMFS091A02+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
JMFS013C04+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
JMFS079D11+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
JMFS050D04+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
JMFS065D11+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
JMFS142G09+           GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
                      ____________________________________________________________
consensus             GATGCAAACTTTAATCAACTTAATAGTTTTCCAGGCGAAACCCAGAAGCTGAAACTCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
JMFS091A02+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
JMFS013C04+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
JMFS079D11+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
JMFS050D04+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
JMFS065D11+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
JMFS142G09+           AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
                      ____________________________________________________________
consensus             AAACTCTGTCCCCAGAGATTCCCTTGTCAAAAAGGCTGTGAAACACGGGGATGGCCACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS101C05+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGAC               
JMFS091A02+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
JMFS013C04+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
JMFS079D11+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
JMFS050D04+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
JMFS065D11+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
JMFS142G09+           GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
                      ____________________________________________________________
consensus             GGTTCAAATCTGGGGAGACCCAAAAAAGATCAAGAACACAGAGACCACCACCATGTCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS091A02+           CGATATAGTCAA                                                
JMFS013C04+           CGATATAGTCAAGAAAGAGTGCCTAACTACGTATATATTACTGTAATAAGATTTCGGAAA
JMFS079D11+           CGATATAGTCAAGAAAGAGTGCCTAACTACGTATATATTACTGTAATAAGATTTCGGAAA
JMFS050D04+           CGATATAGTCAAGAAAGAGTGCCTAACTACGTATATATTACTGTAATAAGATTTCGGAAA
JMFS065D11+           CGATATAGTCAAGAAAGAGTGCCTAACTACGTATATATTACTGTAATAAGATTTCGGAAA
JMFS142G09+           CGATATAGTCAAGAAAGAGTGCCTAACTACGTATATATTACTGTAATAAGATTTCGGAAA
                      ____________________________________________________________
consensus             CGATATAGTCAAGAAAGAGTGCCTAACTACGTATATATTACTGTAATAAGATTTCGGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS013C04+           TATTT-AAACACAAAAACTTTTATGGTACCG                             
JMFS079D11+           TATTTAAAACACAAAAACTTTTATGGTACCGA                            
JMFS050D04+           TATTTAAAACACAAAAACTTTTATGGTACCGA                            
JMFS065D11+           TATTTAAAACACAAAAACTTTTATGGTACCGA                            
JMFS142G09+           TATTTAAAACACAAAAACTTTTATGGTACCGAGTAGCAGGCACTGAATGAAATGTTTCTT
                      ____________________________________________________________
consensus             TATTTAAAACACAAAAACTTTTATGGTACCGAGTAGCAGGCACTGAATGAAATGTTTCTT