Contig 010511:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS021D12Sequence631010511 (6)ref|XP_006429961.1|1e-40hypothetical protein CICLE_v100110481mg, partial [Citrus clementina] gb|ESR43201
JMFS075C11Sequence617010511 (6)ref|XP_006429961.1|9e-49hypothetical protein CICLE_v100110481mg, partial [Citrus clementina] gb|ESR43201
JMFS141C02Sequence383010511 (6)
JMFS145H11Sequence622010511 (6)ref|XP_006429961.1|1e-39hypothetical protein CICLE_v100110481mg, partial [Citrus clementina] gb|ESR43201
JMFS146B10Sequence422010511 (6)ref|XP_004485443.1|2e-11PREDICTED: eukaryotic translation initiation factor 3 subunit C-like [Cicer ari
JMFS159D08Sequence357010511 (6)

Alignment

This contig is upended


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JMFS021D12+                                                            GCAAAGGCCTC
JMFS075C11+                    GGCATTACTACTACTCATTTTCTTCTTAGCTTCCTTATTTGCAAAGGCCTC
JMFS145H11+                                                            GCAAAGGCCTC
                      ____________________________________________________________
consensus                      GGCATTACTACTACTCATTTTCTTCTTAGCTTCCTTATTTGCAAAGGCCTC
 
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JMFS021D12+           ACTCAGAAAGTCCTCCAACATCACTAAAGCCTTAATATAGAGATCTGGCACCTTCTCTGC
JMFS075C11+           ACTCAGAAAGTCCTCCAACATCACTAAAGCCTTAATATAGAGATCTGGCACCTTCTCTGC
JMFS145H11+           ACTCAGAAAGTCCTCCAACATCACTAAAGCCTTAATATAGAGATCTGGCACCTTCTCTGC
                      ____________________________________________________________
consensus             ACTCAGAAAGTCCTCCAACATCACTAAAGCCTTAATATAGAGATCTGGCACCTTCTCTGC
 
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JMFS021D12+           ATCTATTGTACGCATCACCTTCTCTAGCTGCTTATTGATCTTGTCAAAACTCTCTTGCAG
JMFS075C11+           ATCTATTGTACGCATCACCTTCTCTAGCTGCTTATTGATCTTGTCAAAACTCTCTTGCAG
JMFS145H11+           ATCTATTGTACGCATCACCTTCTCTAGCTGCTTATTGATCTTGTCAAAACTCTCTTGCAG
                      ____________________________________________________________
consensus             ATCTATTGTACGCATCACCTTCTCTAGCTGCTTATTGATCTTGTCAAAACTCTCTTGCAG
 
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JMFS021D12+           GCTGACCCAGTCATTTATCTTCATGGCATTCTTCATTTGATCAACAGTAGAAGACATCTC
JMFS075C11+           GCTGACCCAGTCATTTATCTTCATGGCATTCTTCATTTGATCAACAGTAGAAGACATCTC
JMFS146B10+                CCCAGTCATTTATCTTCATGGCATTCTTCATTTGATCGGCAGTAGAAGACATCTG
JMFS145H11+           GCTGACCCAGTCATTTATCTTCATGGCATTCTTCATTTGATCAACAGTAGAAGACATCTC
                      ____________________________________________________________
consensus             GCTGACCCAGTCATTTATCTTCATGGCATTCTTCATTTGATCAACAGTAGAAGACATCTC
 
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JMFS021D12+           TTCATACCGCTTGTCAGAACGTTTGACAACACGTCGATGCACATTCGAGTCATCACTATC
JMFS075C11+           TTCATACCGCTTGTCAGAACGTTTGACAACACGTCGATGCACATTCGAGTCATCACTATC
JMFS146B10+           TTCATGCCGCTTGTCAGAACGTTTGACAACACGTCGATGCCCATTCGAGTCATCACTATC
JMFS159D08+                                                        TGAGTCATCACTATC
JMFS145H11+           TTCATACCGCTTGTCAGAACGTTTGACAACACGTCGATGCACATTCGAGTCATCACTATC
                      ____________________________________________________________
consensus             TTCATACCGCTTGTCAGAACGTTTGACAACACGTCGATGCACATTCGAGTCATCACTATC
 
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JMFS021D12+           AGACTCAGTATCAGATACAAGATACTTGCTCTTATTTGCAGCATCAATTGAATCTACAGC
JMFS075C11+           AGACTCAGTATCAGATACAAGATACTTGCTCTTATTTGCAGCATCAATTGAATCTACAGC
JMFS146B10+           AGACTCAGTATCAGATACAAGATACTTGCTCTTATTTGCAGCATCAATTGAATATACAGC
JMFS159D08+           AGACTCGGAATCAGATACAAGATACTTGCTCTTATTTGCAGCATCAATTGAATCTACAGG
JMFS145H11+           AGACTCAGTATCAGATACAAGATACTTGCTCTTATTTGCAGCATCAATTGAATCTACAGC
JMFS141C02+                                                GCAGCATCAATTGAATGTGCAGC
                      ____________________________________________________________
consensus             AGACTCAGTATCAGATACAAGATACTTGCTCTTATTTGCAGCATCAATTGAATCTACAGC
 
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JMFS021D12+           TTCTTCAACCTCAATATCACTCTCCTCCTCTTCACTTTCACTGTCACCC           
JMFS075C11+           TTCTTCAACCTCAATATCACTCTCCTCCTCTTCACTTTCACTGTCACCCTGAGTCCAGAA
JMFS146B10+           TTCTTCAACCTCAATATCACTCTCCTCCTTTTCGCTTTCACTGTCACCCTGAGTCCAGAA
JMFS159D08+           TTCTTCAACCTCAATATCACTCTCCTCCTCTTCACTTTCACTGTCACCC           
JMFS145H11+           TTCTTCAACCTCAATATCACTCTCCTCCTCTTCACTTTCACTGTCACCCTGAGTCCAGAA
JMFS141C02+           TTCTTCAACCTCAATATCACTCTCCTCCTCTTCACTTTCACTGTCACCCTGAGTCCAGAA
                      ____________________________________________________________
consensus             TTCTTCAACCTCAATATCACTCTCCTCCTCTTCACTTTCACTGTCACCCTGAGTCCAGAA
 
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JMFS075C11+           TCGTGAAGCCATGTTTCCAAGGGTTTGTTAACA-GAATAAATAAACTTGGGAGAACGTTC
JMFS146B10+           TCGTCAAGCCATGTTTCCAAGGGTTTGTTATCATGAATAAATAAACTTGGGAGAACGTTC
JMFS145H11+           TCGTGAAGCCATGTTTCCAAGGGTTTGTTAACA-GAATAAATAAACTTGGGAGAACGTTC
JMFS141C02+           TCGTGAAGCCATGTTTCCAAGGGTTTGTTAACA-GAATAAATAAACTTGGGAGAACGTTC
                      ____________________________________________________________
consensus             TCGTGAAGCCATGTTTCCAAGGGTTTGTTAACA-GAATAAATAAACTTGGGAGAACGTTC
 
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JMFS075C11+           GGAGAGTGGATTCTACAATCGAGGACGGAGATTTCGATGAGTTTGATGTCGACCTCTCCC
JMFS146B10+           GGAGAGTGGATTCTACAATCGAGGGCGGAGATTTCGATGAGTTTGATGTCGACCTCTCCC
JMFS145H11+           GGAGAGTGGATTCTACAATCGAGGACGGAGATTTCGATGAGTTTGATGTCGACCTCTCCC
JMFS141C02+           GGAGAGTGGATTCTACAATCGAGGACGGAGATTTCGATGAGTTTGATGTCGACCTCTCCC
                      ____________________________________________________________
consensus             GGAGAGTGGATTCTACAATCGAGGACGGAGATTTCGATGAGTTTGATGTCGACCTCTCCC
 
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JMFS075C11+           GGAAACCTTCTCGTGTTGGTCACTTGGTCGGAAGCGGACGCCGGAGCTGGAGGGTGAGGG
JMFS146B10+           GGAAACCTTCTCGTGTTGGTCACTTGGTCGGAAGCGGACGCCGGAGCTGGAGGGTGAGGG
JMFS145H11+           GGAAACCTTCTCGTGTTGGTCACTTGGTCGGAAGCGGACGCCGGAGCTGGAGGGTGAGGG
JMFS141C02+           GGAAACCTTCTCGTGTTGGTCACTTGGTCGGAAGCGGACGCCGGAGCTGGAGGGTGAGGG
                      ____________________________________________________________
consensus             GGAAACCTTCTCGTGTTGGTCACTTGGTCGGAAGCGGACGCCGGAGCTGGAGGGTGAGGG
 
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JMFS075C11+           AGACTGGCAGAGGGATTTAGAATGGCA                                 
JMFS146B10+           AGACTGG                                                     
JMFS145H11+           AGACTGGCAGAGGGATTTAGAATGGCAGACCCTGTGTGGGGGGGTTTTGATCCGTAATTT
JMFS141C02+           AGACTGGCAGAGGGATTTAGAATGGCAGACCCTGTGTGGGGGGGTTTTGATCCGTAATTT
                      ____________________________________________________________
consensus             AGACTGGCAGAGGGATTTAGAATGGCAGACCCTGTGTGGGGGGGTTTTGATCCGTAATTT
 
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JMFS145H11+           CCCTGCGG                                                    
JMFS141C02+           CCCTGCGGCGTATGACTCCTTTTTCTTTAGGGTTTCAAGTTTTGGGTAATTTAAGAATTA
                      ____________________________________________________________
consensus             CCCTGCGGCGTATGACTCCTTTTTCTTTAGGGTTTCAAGTTTTGGGTAATTTAAGAATTA