Contig 010510:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS076A04Sequence642010510 (3)ref|XP_009795584.1|305PREDICTED: phosphoenolpyruvate carboxylase-like [Nicotiana sylvestris]
JMFS085G02Sequence615010510 (3)ref|XP_009795584.1|288PREDICTED: phosphoenolpyruvate carboxylase-like [Nicotiana sylvestris]
JMFS140E02Sequence623010510 (3)ref|XP_009795584.1|290PREDICTED: phosphoenolpyruvate carboxylase-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS085G02+                                                   CTCATCGAGCTCCTGCTTAT
JMFS076A04+                        AGCTGCCTGTATCTCTCTCTGTAGAGCCTCATCGAGCTCCTGCTTAT
JMFS140E02+                                                AGCCTCATCGAGCTCCTGCTTAT
                      ____________________________________________________________
consensus                          AGCTGCCTGTATCTCTCTCTGTAGAGCCTCATCGAGCTCCTGCTTAT
 
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JMFS085G02+           CATCAGGAGTGATGTCTTTAGCATACAACTGAGTCAAACAATCCCGAATCCTTGCATGTT
JMFS076A04+           CATCAGGAGTGATGTCTTTAGCATACAACTGAGTCAAACAATCCCGAATCCTTGCATGTT
JMFS140E02+           CATCAGGAGTGATGTCTTTAGCATACAACTGAGTCAAACAATCCCGAATCCTTGCATGTT
                      ____________________________________________________________
consensus             CATCAGGAGTGATGTCTTTAGCATACAACTGAGTCAAACAATCCCGAATCCTTGCATGTT
 
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JMFS085G02+           TTTGAAGCAAAGATCTACGAACAGACTGAGTAGGATGGGCGGTGAGCACAAGATCAACTG
JMFS076A04+           TTTGAAGCAAAGATCTACGAACAGACTGAGTAGGATGGGCGGTGAGCACAAGATCAACTG
JMFS140E02+           TTTGAAGCAAAGATCTACGAACAGACTGAGTAGGATGGGCGGTGAGCACAAGATCAACTG
                      ____________________________________________________________
consensus             TTTGAAGCAAAGATCTACGAACAGACTGAGTAGGATGGGCGGTGAGCACAAGATCAACTG
 
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JMFS085G02+           TCTGGTTCTTTATAGCATCAAACACTTCTTCGGGGGACTTATTCAGTTGTCCTACAAGCC
JMFS076A04+           TCTGGTTCTTTATAGCATCAAACACTTCTTCGGGGGACTTATTCAGTTGTCCTACAAGCC
JMFS140E02+           TCTGGTTCTTTATAGCATCAAACACTTCTTCGGGGGACTTATTCAGTTGTCCTACAAGCC
                      ____________________________________________________________
consensus             TCTGGTTCTTTATAGCATCAAACACTTCTTCGGGGGACTTATTCAGTTGTCCTACAAGCC
 
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JMFS085G02+           TCCTAAGAGTCTCTTCGATGTCCGATTCAGTTGTGGCAGACGCCTCATCAGACAAATCAC
JMFS076A04+           TCCTAAGAGTCTCTTCGATGTCCGATTCAGTTGTGGCAGACGCCTCATCAGACAAATCAC
JMFS140E02+           TCCTAAGAGTCTCTTCGATGTCCGATTCAGTTGTGGCAGACGCCTCATCAGACAAATCAC
                      ____________________________________________________________
consensus             TCCTAAGAGTCTCTTCGATGTCCGATTCAGTTGTGGCAGACGCCTCATCAGACAAATCAC
 
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JMFS085G02+           GCTTCTTGAACTTACTCCTCCGCCTCGAGGCTATCTGAACCTCTTCAGCCAGATTGGCTA
JMFS076A04+           GCTTCTTGAACTTACTCCTCCGCCTCGAGGCTATCTGAACCTCTTCAGCCAGATTGGCTA
JMFS140E02+           GCTTCTTGAACTTACTCCTCCGCCTCGAGGCTATCTGAACCTCTTCAGCCAGATTGGCTA
                      ____________________________________________________________
consensus             GCTTCTTGAACTTACTCCTCCGCCTCGAGGCTATCTGAACCTCTTCAGCCAGATTGGCTA
 
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JMFS085G02+           AGTTAAGCATATTGGAAAACGCTTTGGTAACCACAATGGAATTCCCGGGATCCAGACTAG
JMFS076A04+           AGTTAAGCATATTGGAAAACGCTTTGGTAACCACAATGGAATTCCCGGGATCCAGACTAG
JMFS140E02+           AGTTAAGCATATTGGAAAACGCTTTGGTAACCACAATGGAATTCCCGGGATCCAGACTAG
                      ____________________________________________________________
consensus             AGTTAAGCATATTGGAAAACGCTTTGGTAACCACAATGGAATTCCCGGGATCCAGACTAG
 
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JMFS085G02+           TAATCACCCTCCCAAGCTCCTCTAGTTTCTGGGTATCTTGCTTCCCTTCATATTCTGCTG
JMFS076A04+           TAATCACCCTCCCAAGCTCCTCTAGTTTCTGGGTATCTTGCTTCCCTTCATATTCTGCTG
JMFS140E02+           TAATCACCCTCCCAAGCTCCTCTAGTTTCTGGGTATCTTGCTTCCCTTCATATTCTGCTG
                      ____________________________________________________________
consensus             TAATCACCCTCCCAAGCTCCTCTAGTTTCTGGGTATCTTGCTTCCCTTCATATTCTGCTG
 
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JMFS085G02+           AAAGCTCATA                                                  
JMFS076A04+           AAAGCTCATA                                                  
JMFS140E02+           AAAGCTCATAGCATTCTTGAACCTAGTGGAAATTCAACCAGTTTACAGTCATGACAGATG
                      ____________________________________________________________
consensus             AAAGCTCATAGCATTCTTGAACCTAGTGGAAATTCAACCAGTTTACAGTCATGACAGATG
 
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JMFS140E02+           CTTTTGTGTGATATATTTAGTTAAAATTCTATTGATGATGAGCGGGCAAAAGCCCCCAGA
                      ____________________________________________________________
consensus             CTTTTGTGTGATATATTTAGTTAAAATTCTATTGATGATGAGCGGGCAAAAGCCCCCAGA
 
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JMFS140E02+           TCCCCCGGTTTGTGAGCCAGGTTCCCCCCTTCTTTTTTCTTGGCACGAGATGCCGTTACA
                      ____________________________________________________________
consensus             TCCCCCGGTTTGTGAGCCAGGTTCCCCCCTTCTTTTTTCTTGGCACGAGATGCCGTTACA