| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF050J04 | Sequence | 642 | 010509 (7) | ref|XP_009790333.1| | 1e-83 | PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein-like [Nicotiana sylvest | 580 | 008392 (2) | ref|XP_009790333.1| | 7e-34 | PREDICTED: LOW QUALITY PROTEIN: Niemann-Pick C1 protein-like [Nicotiana sylvest |
| JMFS082F05 | Sequence | 620 | 010509 (7) | ref|XP_007018055.1| | 2e-86 | Patched family protein isoform 17 [Theobroma cacao] gb|EOY15280.1| Patched famil | |||||
| JMFS114D07 | Sequence | 571 | 010509 (7) | ref|XP_004238435.1| | 7e-91 | PREDICTED: Niemann-Pick C1 protein [Solanum lycopersicum] | |||||
| JMFS114F06 | Sequence | 563 | 010509 (7) | ref|XP_006342140.1| | 1e-88 | PREDICTED: niemann-Pick C1 protein-like [Solanum tuberosum] | |||||
| JMFS128G02 | Sequence | 611 | 010509 (7) | ref|XP_006342140.1| | 1e-90 | PREDICTED: niemann-Pick C1 protein-like [Solanum tuberosum] | |||||
| JMFS140B12 | Sequence | 609 | 010509 (7) | ref|XP_007018055.1| | 4e-80 | Patched family protein isoform 17 [Theobroma cacao] gb|EOY15280.1| Patched famil | |||||
| JMFS162G01 | Sequence | 606 | 010509 (7) | ref|XP_004238435.1| | 5e-97 | PREDICTED: Niemann-Pick C1 protein [Solanum lycopersicum] | |||||
This contig is upended
. : . : . : . : . : . :
JMFS114F06+ CCCATAATCATC
____________________________________________________________
consensus CCCATAATCATC
. : . : . : . : . : . :
JMFS114F06+ AAAATTTGCAGGATTCATCTTGAAATACTGAAGAATACTTTGAGTAGCACAATCCTTGCC
JMFS162G01+ TACTGAAGAATACTTTGAGTAGCACAATCCTTGCC
____________________________________________________________
consensus AAAATTTGCAGGATTCATCTTGAAATACTGAAGAATACTTTGAGTAGCACAATCCTTGCC
. : . : . : . : . : . :
JMFS114F06+ AAGTGGCTTCATACAAATATCATTAAGAGAAATAACCGATCCAGAATAATTAGCTTTGAT
JMFS162G01+ AAGTGGCTTCATACAAATATCATTAAGAGAAATAACCGATCCAGAATAATTAGCTTTGAT
____________________________________________________________
consensus AAGTGGCTTCATACAAATATCATTAAGAGAAATAACCGATCCAGAATAATTAGCTTTGAT
. : . : . : . : . : . :
JMFS114F06+ TGCATCTACCTTTCTTTGTATGTCAAAAAGCAACTTGATGTTG---TCTGTAACAATTGG
JMFS162G01+ TGCATCTACCTTTCTTTGTATGTCAAAAAGCAACTTGATGTTGTCTTCTGTAACAATTGG
____________________________________________________________
consensus TGCATCTACCTTTCTTTGTATGTCAAAAAGCAACTTGATGTTGTCTTCTGTAACAATTGG
. : . : . : . : . : . :
JMFS114F06+ GGGTGATTTCCCATTCTTCATGTCAGGATTTACAGCTATTATGAGCTGCTCAATTCTGTA
JMFS162G01+ GGGTGATTTCCCATTCTTCATGTCAGGATTTACAGCTATTATGAGCTGCTCAATTCTGTA
____________________________________________________________
consensus GGGTGATTTCCCATTCTTCATGTCAGGATTTACAGCTATTATGAGCTGCTCAATTCTGTA
. : . : . : . : . : . :
JMFS114F06+ AAAAGGTGCTAGGTTGCTGTCAAAAAATTCCTTCTCTTCTGCGGCTCTACTGCCATGGCC
JMFS162G01+ AAAAGGTGCTAGGTTGCTGTCAAAAAATTCCTTCTCTTCTGCGGCTCTACTGCCATGGCC
JMFS114D07+ ACTGCCATGGCC
____________________________________________________________
consensus AAAAGGTGCTAGGTTGCTGTCAAAAAATTCCTTCTCTTCTGCGGCTCTACTGCCATGGCC
. : . : . : . : . : . :
JMFS114F06+ AACCCATAGCTTCTCAGGCCTTGTTTCAACTCTAAAGCGGAATAAACCCAAGCAAAGTAC
JMFS162G01+ AACCCATAGCTTCTCAGGCCTTGTTTCAACTCTAAAGCGGAATAAACCCAAGCAAAGTAC
JMFS114D07+ AACCCATAGCTTCTCAGGCCTTGTTTCAACTCTAAAGCGGAATAAACCCAAGCAAAGTAC
____________________________________________________________
consensus AACCCATAGCTTCTCAGGCCTTGTTTCAACTCTAAAGCGGAATAAACCCAAGCAAAGTAC
. : . : . : . : . : . :
JMFS114F06+ CAGAACAATGATCAATGATGAACACAATACCAGGGCTGGGTTCCTAGCAACCCAAGTTCC
JMFS162G01+ CAGAACAATGATCAATGATGAACACAATACCAGGGCTGGGTTCCTAGCAACCCAAGTTCC
JMFS114D07+ CAGAACAATGATCAATGATGAACACAATACCAGGGCTGGGTTCCTAGCAACCCAAGTTCC
____________________________________________________________
consensus CAGAACAATGATCAATGATGAACACAATACCAGGGCTGGGTTCCTAGCAACCCAAGTTCC
. : . : . : . : . : . :
JMFS114F06+ ATATTTCCTATAAAACTTTGATAGATATCCTTGCACAAGTGAAAGTTGAACACCGCTCGA
JMFS162G01+ ATATTTCCTATAAAACTTTGATAGATATCCTTGCACAAGTGAAAGTTGAACACCGCTCGA
JMFS114D07+ ATATTTCCTATAAAACTTTGATAGATATCCTTGCACAAGTGAAAGTTGAACACCGCTCGA
____________________________________________________________
consensus ATATTTCCTATAAAACTTTGATAGATATCCTTGCACAAGTGAAAGTTGAACACCGCTCGA
. : . : . : . : . : . :
JMFS114F06+ TATTTGGGGGACATCCTCGAGCATCTGCATTGGGACATTCTCATCTTTTTTACCATTAAC
JMFS162G01+ TATTTGGGGGACATCCTCGAGCATCTGCATTGGGACATTCTCATCTTTTTTACCATTAAC
JMFS114D07+ TATTTGGGGGACATCCTCGAGCATCTGCATTGGGACATTCTCATCTTTTTTACCATTAAC
____________________________________________________________
consensus TATTTGGGGGACATCCTCGAGCATCTGCATTGGGACATTCTCATCTTTTTTACCATTAAC
. : . : . : . : . : . :
JMFS114F06+ CTGGTGGATAACAC
JMFS162G01+ CTGGTGGATAACACCAGCATCAGGAGCATTGACCAATGGTTTTGTTCTAGAAGCTGGAGT
JMFS114D07+ CTGGTGGATAACACCAGCATCAGGAGCATTGACCAATGGTTTTGTTCTAGAAGCTGGAGT
____________________________________________________________
consensus CTGGTGGATAACACCAGCATCAGGAGCATTGACCAATGGTTTTGTTCTAGAAGCTGGAGT
. : . : . : . : . : . :
JMFS162G01+ CCTCTCTTTTCTGCTATGAAGAAAACCCCAT
JMFS114D07+ CCTCTCTTTTCTGCTATGAAGAAAACCCCATCCAAGAAAAACGGAGATCAATATCACATA
JMFF050J04+ ATCCAAGAAAAACGGAGATCAATATCACATA
____________________________________________________________
consensus CCTCTCTTTTCTGCTATGAAGAAAACCCCATCCAAGAAAAACGGAGATCAATATCACATA
. : . : . : . : . : . :
JMFS114D07+ AATTATAGCTACAGCAACTTCAATACACCTTGCCTTGAGAGACCCAAAACTCACTGAACA
JMFF050J04+ AA-TATAGCTACAGCAACTTCAATACACC-TGCCCTGAGAGACCCAAAACTCACTGAACA
____________________________________________________________
consensus AATTATAGCTACAGCAACTTCAATACACCTTGCCTTGAGAGACCCAAAACTCACTGAACA
. : . : . : . : . : . :
JMFS114D07+ GGAACCTTTCTTTTGAGCTGGAGAAGGAGCTGCATTTGAGCATACGGAAGACGAAGGGC-
JMFF050J04+ GGAACCTTTCTTTTGAGCTGGAGAAGGAGCTGCATTTGAGCATACGGAAGACGAAGGGCA
____________________________________________________________
consensus GGAACCTTTCTTTTGAGCTGGAGAAGGAGCTGCATTTGAGCATACGGAAGACGAAGGGCA
. : . : . : . : . : . :
JMFS114D07+ AATCACCACAAGAACAGCCTAGTAAAGTGTCTCCACAGGAATATGTAGAAACATTCATAG
JMFF050J04+ AATCACCACAAGAACAGCCTAGTAAAGTGTCTCCACAGGAATATGTAGAAACATTCATAG
____________________________________________________________
consensus AATCACCACAAGAACAGCCTAGTAAAGTGTCTCCACAGGAATATGTAGAAACATTCATAG
. : . : . : . : . : . :
JMFS114D07+ GTTTCATCCCAGAAGAATCA
JMFF050J04+ GTTTCATCCCAGAAGAATCAGGAGGAGTTGATCTAAAATTAATTGCATATGGCGATCCTG
____________________________________________________________
consensus GTTTCATCCCAGAAGAATCAGGAGGAGTTGATCTAAAATTAATTGCATATGGCGATCCTG
. : . : . : . : . : . :
JMFF050J04+ GTGCAGCAGGTGGTGCTCTTCTACCAATAAATGTGTACCATTCTCTAAAATTTTTAGCAC
____________________________________________________________
consensus GTGCAGCAGGTGGTGCTCTTCTACCAATAAATGTGTACCATTCTCTAAAATTTTTAGCAC
. : . : . : . : . : . :
JMFF050J04+ CTGCACCAACGAATTCAATTGCTCTAGTAATACTGCCAAACTTTACTTCCTTGCAGGATT
JMFS128G02+ CCAAACTTTACCTCCTTGCAGGATT
JMFS082F05+ ATACTGCCAAACTTTACTTCCTTGCAGGATT
JMFS140B12+ TGCAGGATT
____________________________________________________________
consensus CTGCACCAACGAATTCAATTGCTCTAGTAATACTGCCAAACTTTACTTCCTTGCAGGATT
. : . : . : . : . : . :
JMFF050J04+ CATATAAACCCTCACCAAAAGTGTCCGTTATAACATAATCTATCCCGTTTACAGTGAAAT
JMFS128G02+ CATATAGACCCTCGCCAAAAGCGTCAGTTATAAAAAAATCAATCCCATCTACAGTCAAGT
JMFS082F05+ CATATAAACCCTCACCAAAAGTGTCCGTTATAACATAATCTATCCCGTTTACAGTGAAAT
JMFS140B12+ CATATAAACCCTCACCAANAGTGTCCGTTATAACATAATCTATCCCGTTTACAGTGAAAT
____________________________________________________________
consensus CATATAAACCCTCACCAAAAGTGTCCGTTATAACATAATCTATCCCGTTTACAGTGAAAT
. : . : . : . : . : . :
JMFF050J04+ TGTTCATAACTTTTAAAACAGATGTCACATTTATAAACTGACTCTGGTTTGGAGAGCATG
JMFS128G02+ TGTTCTGAACCTTTGAAACAGATGTCACATTTATAAATTGACTCTGGTTTGGAGAACATG
JMFS082F05+ TGTTCATAACTTTTAAAACAGATGTCACATTTATAAACTGACTCTGGTTTGGAGAGCATG
JMFS140B12+ TGTTCATAACTTTTAAAACAGATGTCACATTTATAAACTGACTCTGGTTTGGAGAGCATG
____________________________________________________________
consensus TGTTCATAACTTTTAAAACAGATGTCACATTTATAAACTGACTCTGGTTTGGAGAGCATG
. : . : . : . : . : . :
JMFF050J04+ TAAGCTCACAGAATAGATTCAAGAAATTTCTCAAGCATGCTGGACATCCTACAAGAAACG
JMFS128G02+ AAAGTTCACAGAATAGATTCAAAAAATTTCTCAAGCATGCTGGACAGCCTACAAGGAACG
JMFS082F05+ TAAGCTCACAGAATAGATTCAAGAAATTTCTCAAGCATGCTGGACATCCTACAAGAAACG
JMFS140B12+ TAAGCTCACAGAATAGATTCAAGAAATTTCTCAAGCATGCTGGACATCCTACAAGAAACG
____________________________________________________________
consensus TAAGCTCACAGAATAGATTCAAGAAATTTCTCAAGCATGCTGGACATCCTACAAGAAACG
. : . : . : . : . : . :
JMFF050J04+ GGATTACTTGCTGGACCTGTGATCTTAGAGTGTCAAACTGAGCTTCTGTACAGCAGACAT
JMFS128G02+ GGATTGCTTGCTGGACTTGCGATCTTAAAATGTCAAATTGAGCCTCTGTACAGCATATAT
JMFS082F05+ GGATTACTTGCTGGAACTGTGATCTTAGAGTGTCAAACTGAGCCTCTGTACAGCAGACAT
JMFS140B12+ GGATTACTTGCTGGACCTGTGATCTTAGAGTGTCAAACTGAGCCTCTGTACAGCAGACAT
____________________________________________________________
consensus GGATTACTTGCTGGACCTGTGATCTTAGAGTGTCAAACTGAGCCTCTGTACAGCAGACAT
. : . : . : . : . : . :
JMFF050J04+ TTCCAGTAATAGT
JMFS128G02+ TTCCAGTGATAGTTGGGCACAAACTTTGAATCTTGGATGAAAGCAACTCATCTGGCTTCA
JMFS082F05+ TTCCAGTAATAGTCGGGCACAAACTTTGAATCTTGGATGAGAGCAGATCATCGGGCTTAA
JMFS140B12+ TTCCAGTAATAGTCGGGCACAAACTTTGAATCTTGGATGAGAGCAGATCATCGGGCTTAA
____________________________________________________________
consensus TTCCAGTAATAGTCGGGCACAAACTTTGAATCTTGGATGAGAGCAGATCATCGGGCTTAA
. : . : . : . : . : . :
JMFS128G02+ CAGATGGGGAACCAAAGGGGCAATTCAGCACTTTACCATCACTACGTTTCCCACAAATGT
JMFS082F05+ CAGACGGGGAACCAAAGGGGCAATTCAGAACTTTACCATCACTGCGGTGTCCACAAATGT
JMFS140B12+ CAGACGGGGAACCAAAGGGGCAATTCAGAACTTTACCATCACTGCGGTGTCCACAAATGT
____________________________________________________________
consensus CAGACGGGGAACCAAAGGGGCAATTCAGAACTTTACCATCACTGCGGTGTCCACAAATGT
. : . : . : . : . : . :
JMFS128G02+ CATACATGGCGCAATATCCTTCTGAATGTCTTTCCCCCGTGGGCGCCTGTGCTGCCACCA
JMFS082F05+ CATACATGGCACAATATCCTTCAGAATGTCTTTCCCCATTGGACGTCTGGGCTGTCACCT
JMFS140B12+ CATACATGGCACAATATCCTTCAGAATGTCTTTCCCCATTGGACGTCTGGGCTGTCACCT
____________________________________________________________
consensus CATACATGGCACAATATCCTTCAGAATGTCTTTCCCCATTGGACGTCTGGGCTGTCACCT
. : . : . : . : . : . :
JMFS128G02+ TCGAACCACTTATGAAGACCTGAAGAAACAAAG
JMFS082F05+ TAGAAACACTTAAGAAGACCTGAAGAAACAAAGCAGCGGCGAAACAAGCCATGAGAGGAA
JMFS140B12+ TAGAAACACTTAAGAAGACCTGAAGAAACAAAGCAGCGGCGAAACAAGCCATGAGAGGAA
____________________________________________________________
consensus TAGAAACACTTAAGAAGACCTGAAGAAACAAAGCAGCGGCGAAACAAGCCATGAGAGGAA
. : . : . : . : . : . :
JMFS082F05+ GGCTGAGTCCCCTTCCTCCGGGAGAGAACTCCATTTTTGGTTTGAATTGAAGGAGCTGGT
JMFS140B12+ GGCTGAGTCCCCTTCCTCCGGGAGAGAACTCCATTTTTGGTTTGAATTGAAGGAGCTGGT
____________________________________________________________
consensus GGCTGAGTCCCCTTCCTCCGGGAGAGAACTCCATTTTTGGTTTGAATTGAAGGAGCTGGT
. : . : . : . : . : . :
JMFS082F05+ GAATCGGCGGTGTGAAGAGGAGAAGCAGAATTTAGTGAATTA
JMFS140B12+ GAATCGGCGGTGTGAAGAGGAGAAGCAGAATTTAGTGAATTAGTATTAGTAGTGTAAAGA
____________________________________________________________
consensus GAATCGGCGGTGTGAAGAGGAGAAGCAGAATTTAGTGAATTAGTATTAGTAGTGTAAAGA