| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN034N18 | Sequence | 633 | 010504 (6) | ref|NP_001275226.1| | 3e-67 | uncharacterized protein LOC102577826 [Solanum tuberosum] gb|ABA81859.1| unknown | |||||
| JMFS131C06 | Sequence | 616 | 010504 (6) | ref|NP_001275226.1| | 6e-57 | uncharacterized protein LOC102577826 [Solanum tuberosum] gb|ABA81859.1| unknown | |||||
| JMSF030M04 | Sequence | 616 | 010504 (6) | ref|XP_002299587.2| | 7e-79 | TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT [Populus trichocarpa] gb|E | 755 | 010504 (6) | ref|XP_004236777.1| | 2e-69 | PREDICTED: transcription initiation factor TFIID subunit 9 [Solanum lycopersicu |
| JMSF050O17 | Sequence | 616 | 010504 (6) | ref|XP_002299587.2| | 7e-79 | TATA BINDING protein ASSOCIATED FACTOR 21KDA SUBUNIT [Populus trichocarpa] gb|E | 757 | 010504 (6) | ref|XP_004236777.1| | 2e-75 | PREDICTED: transcription initiation factor TFIID subunit 9 [Solanum lycopersicu |
This contig is upended
. : . : . : . : . : . :
rJMSF030M04- TATTCTCAAACAATGAAATCAAGGGCTAATACACAGCTAAGGAAAT
rJMSF050O17- ATTCTCAAACAATGAAATCAAGGGCTAATACACAGCTAAGGAAAT
____________________________________________________________
consensus TATTCTCAAACAATGAAATCAAGGGCTAATACACAGCTAAGGAAAT
. : . : . : . : . : . :
rJMSF030M04- AGAGAAGAAATGGAGTTAGATTATCAGACATGAGGACACCTTAACTTATGCTATATATAT
rJMSF050O17- AGAGAAGAAATGGAGTTAGATTATCAGACATGAGGACACCTTAACTTATGCTATATATAT
____________________________________________________________
consensus AGAGAAGAAATGGAGTTAGATTATCAGACATGAGGACACCTTAACTTATGCTATATATAT
. : . : . : . : . : . :
rJMSF030M04- GTTCTTGGGCATAATTGCCTTTCAGAAAGTGCACGAAAAAGATTAGGTTCTGTCAATAAA
rJMSF050O17- GTTCTTGGGCATAATTGCCTTTCAGAAAGTGCACGAAAAAGATTAGGTTCTGTCAATAAA
____________________________________________________________
consensus GTTCTTGGGCATAATTGCCTTTCAGAAAGTGCACGAAAAAGATTAGGTTCTGTCAATAAA
. : . : . : . : . : . :
rJMSF030M04- ATTAACATTATAGCACAACATAAGCTCTAACTAGTTACAGCAAAATAGCAAAAGGTTTTC
rJMSF050O17- ATTAACATTATAGCACAACATAAGCTCTAACTAGTTACAGCAAAATAGCAAAAGGTTTTC
____________________________________________________________
consensus ATTAACATTATAGCACAACATAAGCTCTAACTAGTTACAGCAAAATAGCAAAAGGTTTTC
. : . : . : . : . : . :
rJMSF030M04- TTCAGACTCCTTGCAACTAAAAGATGGTGGAAGGTGACAAGAGTGTCATCTTGGTCGTTT
rJMSF050O17- TTCAGACTCCTTGCAACTAAAAGATGGTGGAAGGTGACAAGAGTGTCATCTTGGTCGTTT
____________________________________________________________
consensus TTCAGACTCCTTGCAACTAAAAGATGGTGGAAGGTGACAAGAGTGTCATCTTGGTCGTTT
. : . : . : . : . : . :
rJMSF030M04- AGCTCCAAGGGGAAAAGAGACTCGCTGAGGAGCCTCTTGAGGCACATCTGTCCGATCTTG
rJMSF050O17- AGCTCCAAGGGGAAAAGAGACTCGCTGAGGAGCCTCTTGAGGCACATCTGTCCGATCTTG
____________________________________________________________
consensus AGCTCCAAGGGGAAAAGAGACTCGCTGAGGAGCCTCTTGAGGCACATCTGTCCGATCTTG
. : . : . : . : . : . :
rJMSF030M04- GGAAAGATTTTGGTTTTGGTTAGATGCGGGATTAGGATCGGAACCCTCTTCCTCCTCAGT
rJMSF050O17- GGAAAGATTTTGGTTTTGGTTAGATGCGGGATTAGGATCGGAACCCTCTTCCTCCTCAGT
____________________________________________________________
consensus GGAAAGATTTTGGTTTTGGTTAGATGCGGGATTAGGATCGGAACCCTCTTCCTCCTCAGT
. : . : . : . : . : . :
rJMSF030M04- TTCTTCCACATGTTGAGCAGTTCGTTTCTTGGGAATAGCAAGTTGATAGTTGGGGCTGAT
rJMSF050O17- TTCTTCCACATGTTGAGCAGTTCGTTTCTTGGGAATAGCAAGTTGATAGTTGGGGCTGAT
JMSF030M04+ TTCTTCCACATGTTGAGCAGTTCGTTTCTTGGGAATAGCAAGTTGATAGTTGGGGCTGAT
JMSF050O17+ TTCTTCCACATGTTGAGCAGTTCGTTTCTTGGGAATAGCAAGTTGATAGTTGGGGCTGAT
JMFN034N18+ GGCTGAT
____________________________________________________________
consensus TTCTTCCACATGTTGAGCAGTTCGTTTCTTGGGAATAGCAAGTTGATAGTTGGGGCTGAT
. : . : . : . : . : . :
rJMSF030M04- CAAGGTATCTTGTTCAGGAGGCAGTGGGATTCCAGGTCCTGAAATTGATTTTGGAAGAGG
rJMSF050O17- CAAGGTATCTTGTTCAGGAGGCAGTGGGATTCCAGGTCCTGAAATTGATTTTGGAAGAGG
JMSF030M04+ CAAGGTATCTTGTTCAGGAGGCAGTGGGATTCCAGGTCCTGAAATTGATTTTGGAAGAGG
JMSF050O17+ CAAGGTATCTTGTTCAGGAGGCAGTGGGATTCCAGGTCCTGAAATTGATTTTGGAAGAGG
JMFN034N18+ CAGGGTATCTTGTTCAGGAGGCAGTGGGATCCCAGGTCCTGAAATTGATTTTGGCAGAGG
JMFS131C06+ GGTCCTGAAATTGATTTTGGCAGAGG
____________________________________________________________
consensus CAAGGTATCTTGTTCAGGAGGCAGTGGGATTCCAGGTCCTGAAATTGATTTTGGAAGAGG
. : . : . : . : . : . :
rJMSF030M04- AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCAAA
rJMSF050O17- AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCAAA
JMSF030M04+ AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCAAA
JMSF050O17+ AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCAAA
JMFN034N18+ AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCAAA
JMFS131C06+ AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCANA
____________________________________________________________
consensus AATTTTGTTTCTGCTTCGAGCCAACTCTAACAGGACCTCTCTGGGAGGGGGTGGAGCAAA
. : . : . : . : . : . :
rJMSF030M04- GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
rJMSF050O17- GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
JMSF030M04+ GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
JMSF050O17+ GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
JMFN034N18+ GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
JMFS131C06+ GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
____________________________________________________________
consensus GCTAAAATTAACTTTAGACTGAACTGCAAGCTTGAGATCATCAGAGTCTATCACAGTCTT
. : . : . : . : . : . :
rJMSF030M04- GGCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
rJMSF050O17- GGCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
JMSF030M04+ GGCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
JMSF050O17+ GGCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
JMFN034N18+ GCCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
JMFS131C06+ GCCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
____________________________________________________________
consensus GGCAGCATGCTCCGAGTACACCTGTGCATCCATCAACACATCAACAGCATGCCTATACAT
. : . : . : . : . : . :
rJMSF030M04- AAGCTCCAGGAACTGGTGGACC
rJMSF050O17- AAGCTCCAGGAACTGGTGGACCACACGTGGTTCGTACTCTTCACCACCCAT
JMSF030M04+ AAGCTCCAGGAACTGGTGGACCACACGTGGTTCGTACTCTTCAACACCCATTGATTTGAG
JMSF050O17+ AAGCTCCAGGAACTGGTGGACCACACGTGGTTCGTACTCTTCAACACCCATTGATTTGAG
JMFN034N18+ AAGCTCCAGGAACTGGTGGACCACACGTGGTTCGTACTCTTCAACACCCATTGATTTGAG
JMFS131C06+ AAGCTCCAGGAACTGGTGGACCACACGTGGTTCGTACTCTTCAACACCCATTGATTTGAG
____________________________________________________________
consensus AAGCTCCAGGAACTGGTGGACCACACGTGGTTCGTACTCTTCAACACCCATTGATTTGAG
. : . : . : . : . : . :
JMSF030M04+ TAGGGTTTTCACCACCTTTGCATCCCTTGGCAAGTCCTCTTCAGCTCCTTCTGCCATTTG
JMSF050O17+ TAGGGTTTTCACCACCTTTGCATCCCTTGGCAAGTCCTCTTCAGCTCCTTCTGCCATTTG
JMFN034N18+ TAGGGTTTTCACCACCTTTGCATCCCTTGGCAAGTCCTCTTCAGCTCCTTCTGCCATTTG
JMFS131C06+ TAGGGTTTTCACCACCTTTGCATCCCTTGGCAAGTCCTCTTCAGCTCCTTCTGCCATTTG
____________________________________________________________
consensus TAGGGTTTTCACCACCTTTGCATCCCTTGGCAAGTCCTCTTCAGCTCCTTCTGCCATTTG
. : . : . : . : . : . :
JMSF030M04+ CCTCTACTCTATATCCTTCTACCCCTCTGTGTGGCCAAATAATTCAATCCAACCACCACA
JMSF050O17+ CCTCTACTCTATATCCTTCTACCCCTCTGTGTGGCCAAATAATTCAATCCAACCACCACA
JMFN034N18+ CCTCTAC----------TCTACCCCTCTGTGTGGCCAAAAAATTCAATCCAACCACCACA
JMFS131C06+ CCTCTAC----------TCTACCCCTCTGTGTGGCCAAAAAATTCAATCCAACCACCACA
____________________________________________________________
consensus CCTCTACTCTATATCCTTCTACCCCTCTGTGTGGCCAAATAATTCAATCCAACCACCACA
. : . : . : . : . : . :
JMSF030M04+ GTAGTCTGTAGATTTTCAACTT
JMSF050O17+ GTAGTCTGTAGATTTTCAACTT
JMFN034N18+ GTAGTCTGTAGATTTTCAACTTCGTCGTCGACAGTAGAGGAGACCGTTGGTCGCTAGGAG
JMFS131C06+ GTAGTCTGTAGATTTTCAACTTCGTCGTCGACAGTAGAGGAGACCGTTGGTCGCTAGGAG
____________________________________________________________
consensus GTAGTCTGTAGATTTTCAACTTCGTCGTCGACAGTAGAGGAGACCGTTGGTCGCTAGGAG
. : . : . : . : . : . :
JMFN034N18+ CATGCGAGGAACGGAGGCGGCGGAGCACGGCAGCCGGCAGCAGGCGAGGCGGGAGATGGA
JMFS131C06+ CATGCGAGGAACGGAGGCGGCGGAGCACGGCAGCCGGCAGCAGGCGAGGCGGGAGATGGA
____________________________________________________________
consensus CATGCGAGGAACGGAGGCGGCGGAGCACGGCAGCCGGCAGCAGGCGAGGCGGGAGATGGA
. : . : . : . : . : . :
JMFN034N18+ GGACTTGTCTCTGGTCTCTGGTC
JMFS131C06+ GGACTTGTCTCTGGTCTCTGGTCTCTGGTCCCTGGTCCCTGGTCCCTGGTCCGGTGACGA
____________________________________________________________
consensus GGACTTGTCTCTGGTCTCTGGTCTCTGGTCCCTGGTCCCTGGTCCCTGGTCCGGTGACGA
. : . : . : . : . : . :
JMFS131C06+ GAAGGTTAGGGATTTGGAGATGGAATTTTGGATCAACTGACCGGCGATTTGGAGATGGGA
____________________________________________________________
consensus GAAGGTTAGGGATTTGGAGATGGAATTTTGGATCAACTGACCGGCGATTTGGAGATGGGA