Contig 010493:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS112F03Sequence617010493 (2)gb|ABF81460.1|7e-04TIR-NBS type disease resistance protein [Populus trichocarpa]
JMFS129G09Sequence615010493 (2)ref|XP_006342406.1|9e-40PREDICTED: TMV resistance protein N-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS129G09+            GCTTCCTTCCATCTTCGTACCTTCTCCTCATCATCCTTGCCAATTTTTTCAACCAATTC
                      ____________________________________________________________
consensus              GCTTCCTTCCATCTTCGTACCTTCTCCTCATCATCCTTGCCAATTTTTTCAACCAATTC
 
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JMFS129G09+           CTTGAATGAATCCTCAAAACTTCCTTTTTGATTCTGAACATCTGAAGGCTCCACATAGCA
                      ____________________________________________________________
consensus             CTTGAATGAATCCTCAAAACTTCCTTTTTGATTCTGAACATCTGAAGGCTCCACATAGCA
 
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JMFS129G09+           TAAAATTGGCACCACCATTTGCTCTTTCAAATTTTCTTGGCGTTCCATGATTGTTGCAAG
                      ____________________________________________________________
consensus             TAAAATTGGCACCACCATTTGCTCTTTCAAATTTTCTTGGCGTTCCATGATTGTTGCAAG
 
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JMFS129G09+           TTCTTCCAAACACCATTTTGACAATGCATAACCTTTGGAGAAGATTGCGATCAAGAACTT
                      ____________________________________________________________
consensus             TTCTTCCAAACACCATTTTGACAATGCATAACCTTTGGAGAAGATTGCGATCAAGAACTT
 
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JMFS129G09+           TGATTCTTGAATAGCTTTTAGTAGGCTCGGGGAGATGCAGTCTCCTTTCTCAAGTCGATC
                      ____________________________________________________________
consensus             TGATTCTTGAATAGCTTTTAGTAGGCTCGGGGAGATGCAGTCTCCTTTCTCAAGTCGATC
 
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JMFS129G09+           GTCATCTTTGAAAGTGCGAATTCCTTTACGCTCTAAGGAACCATAAAGGTAATCTATAAA
                      ____________________________________________________________
consensus             GTCATCTTTGAAAGTGCGAATTCCTTTACGCTCTAAGGAACCATAAAGGTAATCTATAAA
 
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JMFS129G09+           AGTCTCACAAGTATCTGAACCTCTAAAACTCAAAAAAAACATCATAAGTCCATCTCTGAG
                      ____________________________________________________________
consensus             AGTCTCACAAGTATCTGAACCTCTAAAACTCAAAAAAAACATCATAAGTCCATCTCTGAG
 
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JMFS129G09+           TTGATTGTGAAGCAGTAGCAGAAGAGGTAGAAGGCATCAAGCCGTATGGCAAGAATTTGG
                      ____________________________________________________________
consensus             TTGATTGTGAAGCAGTAGCAGAAGAGGTAGAAGGCATCAAGCCGTATGGCAAGAATTTGG
 
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JMFS129G09+           GTTCCCCTGAATCACCATTATCATGGGAAGTAGCTATAGTTTTGCTCCATATTGCTTCAC
JMFS112F03+                 CTGAATCACCATTATCATGGGAAGTAGCTATAGTTTGGCTCCACAATGCTTCAC
                      ____________________________________________________________
consensus             GTTCCCCTGAATCACCATTATCATGGGAAGTAGCTATAGTTTTGCTCCATATTGCTTCAC
 
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JMFS129G09+           TTGATGATTCATCATTTTTATATAATAAACCACAACTCCAATCTGTTGAAACGTTTGATG
JMFS112F03+           TTAATGATTCATCATTTTGATATAACAAACCACAACTCCAATCTGTTGAAACATTTGATG
                      ____________________________________________________________
consensus             TTGATGATTCATCATTTTTATATAATAAACCACAACTCCAATCTGTTGAAACGTTTGATG
 
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JMFS129G09+           CAGGAT                                                      
JMFS112F03+           CAGGATCCCCAAATGCCACCTCAAATACCAAATAATCACTGGGGATAGCTCTCAATTTAT
                      ____________________________________________________________
consensus             CAGGATCCCCAAATGCCACCTCAAATACCAAATAATCACTGGGGATAGCTCTCAATTTAT
 
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JMFS112F03+           TCTTAAACAGACTAAGAAATGGTATGTAGGCAAAGCCTATGATTTCCAAATACTCTTGAC
                      ____________________________________________________________
consensus             TCTTAAACAGACTAAGAAATGGTATGTAGGCAAAGCCTATGATTTCCAAATACTCTTGAC
 
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JMFS112F03+           GATCGAATTCAGAATTAAACTCTTCATCGCATAGTCTGCCAATAACACAATTTGTCTGGA
                      ____________________________________________________________
consensus             GATCGAATTCAGAATTAAACTCTTCATCGCATAGTCTGCCAATAACACAATTTGTCTGGA
 
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JMFS112F03+           GAAGTTGTTTATTATCTTTGTGTACCAGCTGGGCTATGACCTCACGGTATCTAAAAGGAC
                      ____________________________________________________________
consensus             GAAGTTGTTTATTATCTTTGTGTACCAGCTGGGCTATGACCTCACGGTATCTAAAAGGAC
 
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JMFS112F03+           GACCGTCTGGGCATGATTTCCATTTATGATCATGTGAATCGAGAGTAAAGCACACAACAA
                      ____________________________________________________________
consensus             GACCGTCTGGGCATGATTTCCATTTATGATCATGTGAATCGAGAGTAAAGCACACAACAA