Contig 010474:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029H13Sequence418006014 (16)emb|CDY67992.1|9e-26BnaCnng57230D [Brassica napus]673010474 (4)emb|CDX70403.1|3e-47BnaC03g04870D [Brassica napus]
JMFS082G10Sequence555010474 (4)ref|XP_008393881.1|8e-10PREDICTED: ER membrane protein complex subunit 1-like [Malus domestica]
JMSF004I13Sequence424006014 (16)ref|XP_010325953.1|3e-15PREDICTED: ER membrane protein complex subunit 1 [Solanum lycopersicum]540010474 (4)ref|XP_007137195.1|6e-32hypothetical protein PHAVU_009G1078001g, partial [Phaseolus vulgaris] gb|ESW0918
JMSF042L18Sequence775006014 (16)ref|XP_011094459.1|2e-62PREDICTED: ER membrane protein complex subunit 1 [Sesamum indicum]837010474 (4)ref|XP_011094459.1|2e-71PREDICTED: ER membrane protein complex subunit 1 [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042L18+ GAAG
                      ____________________________________________________________
consensus GAAG
 
. : . : . : . : . : . :
rJMSF042L18+ TTTTGGCAAAGTCACAGTCTTACTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATC
                      ____________________________________________________________
consensus TTTTGGCAAAGTCACAGTCTTACTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATC
 
. : . : . : . : . : . :
rJMSF042L18+ AACAGCCAAAGGCATAACTTCCAAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTT
                      ____________________________________________________________
consensus AACAGCCAAAGGCATAACTTCCAAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTT
 
. : . : . : . : . : . :
rJMFF029H13+ GAACTGTGAATCCAACTCAAGCTGAGAA
rJMSF042L18+ GGCACTAGACAAGCGATTTTTAGATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAA
                      ____________________________________________________________
consensus GGCACTAGACAAGCGATTTTTAGATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAA
 
. : . : . : . : . : . :
rJMFF029H13+ AGAGGATGGAATAATACCTCTTACTGATTCTTTACCTATAATCCCACAGTCTTATGTGAC
rJMSF004I13+ CAGTCTTATGTGAC
rJMSF042L18+ AGAGGATGGAATAATACCTCTTACTGATTCTTTACCTATAATCCCACAGTCTTATGTGAC
                      ____________________________________________________________
consensus AGAGGATGGAATAATACCTCTTACTGATTCTTTACCTATAATCCCACAGTCTTATGTGAC
 
. : . : . : . : . : . :
rJMFF029H13+ TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
rJMSF004I13+ TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
rJMSF042L18+ TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
                      ____________________________________________________________
consensus TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
 
. : . : . : . : . : . :
rJMFF029H13+ CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
rJMSF004I13+ CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
rJMSF042L18+ CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
JMFS082G10- AGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
                      ____________________________________________________________
consensus CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
 
. : . : . : . : . : . :
rJMFF029H13+ GGCCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
rJMSF004I13+ GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
rJMSF042L18+ GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
JMFS082G10- GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
                      ____________________________________________________________
consensus GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
 
. : . : . : . : . : . :
rJMFF029H13+ ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
rJMSF004I13+ ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
rJMSF042L18+ ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
JMFS082G10- ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
                      ____________________________________________________________
consensus ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
 
. : . : . : . : . : . :
rJMFF029H13+ GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
rJMSF004I13+ GTGGAGATGAGTTGAATCAGGNGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
rJMSF042L18+ GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
JMFS082G10- GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
                      ____________________________________________________________
consensus GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
 
. : . : . : . : . : . :
rJMFF029H13+ GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
rJMSF004I13+ GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
rJMSF042L18+ GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
JMFS082G10- GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
                      ____________________________________________________________
consensus GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
 
. : . : . : . : . : . :
rJMFF029H13+ TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
rJMSF004I13+ TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
rJMSF042L18+ TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
JMFS082G10- TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
                      ____________________________________________________________
consensus TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
 
. : . : . : . : . : . :
rJMFF029H13+ GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCGGCAAGTAGCAAATGTT
rJMSF004I13+ GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
rJMSF042L18+ GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
JMFS082G10- GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
                      ____________________________________________________________
consensus GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
 
. : . : . : . : . : . :
rJMFF029H13+ TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
rJMSF004I13+ TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAAT
rJMSF042L18+ TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
JMFS082G10- TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
                      ____________________________________________________________
consensus TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
 
. : . : . : . : . : . :
rJMFF029H13+ AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCAC
rJMSF042L18+ AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACT
JMFS082G10- AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT
                      ____________________________________________________________
consensus AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT