Contig 010474:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF029H13Sequence418006014 (16)emb|CDY67992.1|9e-26BnaCnng57230D [Brassica napus]673010474 (4)emb|CDX70403.1|3e-47BnaC03g04870D [Brassica napus]
JMFS082G10Sequence555010474 (4)ref|XP_008393881.1|8e-10PREDICTED: ER membrane protein complex subunit 1-like [Malus domestica]
JMSF004I13Sequence424006014 (16)ref|XP_010325953.1|3e-15PREDICTED: ER membrane protein complex subunit 1 [Solanum lycopersicum]540010474 (4)ref|XP_007137195.1|6e-32hypothetical protein PHAVU_009G1078001g, partial [Phaseolus vulgaris] gb|ESW0918
JMSF042L18Sequence775006014 (16)ref|XP_011094459.1|2e-62PREDICTED: ER membrane protein complex subunit 1 [Sesamum indicum]837010474 (4)ref|XP_011094459.1|2e-71PREDICTED: ER membrane protein complex subunit 1 [Sesamum indicum]

Alignment

This contig is upended


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rJMSF042L18+                                                                  GAAG
                      ____________________________________________________________
consensus                                                                     GAAG
 
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rJMSF042L18+          TTTTGGCAAAGTCACAGTCTTACTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATC
                      ____________________________________________________________
consensus             TTTTGGCAAAGTCACAGTCTTACTTTTTTGCACATTCTGTGAAANCATAGCAGTAACATC
 
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rJMSF042L18+          AACAGCCAAAGGCATAACTTCCAAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTT
                      ____________________________________________________________
consensus             AACAGCCAAAGGCATAACTTCCAAGCAGCTCCTTATTGGCACAATTGGTGATCAGGTTTT
 
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rJMFF029H13+                                          GAACTGTGAATCCAACTCAAGCTGAGAA
rJMSF042L18+          GGCACTAGACAAGCGATTTTTAGATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAA
                      ____________________________________________________________
consensus             GGCACTAGACAAGCGATTTTTAGATCCTCGGCGAACTGTGAATCCAACTCAAGCTGAGAA
 
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rJMFF029H13+          AGAGGATGGAATAATACCTCTTACTGATTCTTTACCTATAATCCCACAGTCTTATGTGAC
rJMSF004I13+                                                        CAGTCTTATGTGAC
rJMSF042L18+          AGAGGATGGAATAATACCTCTTACTGATTCTTTACCTATAATCCCACAGTCTTATGTGAC
                      ____________________________________________________________
consensus             AGAGGATGGAATAATACCTCTTACTGATTCTTTACCTATAATCCCACAGTCTTATGTGAC
 
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rJMFF029H13+          TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
rJMSF004I13+          TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
rJMSF042L18+          TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
                      ____________________________________________________________
consensus             TCATGCTGTAAAAGCAGAAGGCCTTAGGGGCATAGTAACTGTTCCGGCAAAGCTGGAGTC
 
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rJMFF029H13+          CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
rJMSF004I13+          CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
rJMSF042L18+          CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
JMFS082G10-                                   AGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
                      ____________________________________________________________
consensus             CACCACCCTCGTCTTTGCTTATGGAGTGGATCTCTTTTTCACCCAGCTTGCTCCTTCAAA
 
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rJMFF029H13+          GGCCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
rJMSF004I13+          GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
rJMSF042L18+          GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
JMFS082G10-           GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
                      ____________________________________________________________
consensus             GACCTATGATTCTCTAACGGACGACTTCAGTTATGCTCTGCTTCTCCTTACTATTGTTGC
 
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rJMFF029H13+          ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
rJMSF004I13+          ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
rJMSF042L18+          ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
JMFS082G10-           ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
                      ____________________________________________________________
consensus             ACTTGTAGTGGCTATTTTCATAACATGGATTTGGTCAGAGCAGAAAGAGCTGCAGGAGAA
 
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rJMFF029H13+          GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
rJMSF004I13+          GTGGAGATGAGTTGAATCAGGNGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
rJMSF042L18+          GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
JMFS082G10-           GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
                      ____________________________________________________________
consensus             GTGGAGATGAGTTGAATCAGGTGAGGTGACAATCCTCCTGTATTTTACCTAATCTGTTTT
 
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rJMFF029H13+          GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
rJMSF004I13+          GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
rJMSF042L18+          GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
JMFS082G10-           GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
                      ____________________________________________________________
consensus             GTCCCTTCCATACACATTGCCCTCCTGTGGAAGAACTAGACGAGCTGTAGTTTTCTTTAT
 
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rJMFF029H13+          TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
rJMSF004I13+          TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
rJMSF042L18+          TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
JMFS082G10-           TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
                      ____________________________________________________________
consensus             TTTAAGTCTGGTCAGTTTACTACCCAAATAGTAGTAGCTTTAGGTGATTTTATTTGGAAG
 
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rJMFF029H13+          GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCGGCAAGTAGCAAATGTT
rJMSF004I13+          GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
rJMSF042L18+          GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
JMFS082G10-           GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
                      ____________________________________________________________
consensus             GGGAAGAGAAACAGGTTTCTGAACATGAACACGGCCGGTTGTCAGCAAGTAGCAAATGTT
 
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rJMFF029H13+          TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
rJMSF004I13+          TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAAT              
rJMSF042L18+          TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
JMFS082G10-           TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
                      ____________________________________________________________
consensus             TCTGACGAGCACTTTTGGTTGACATTGAAATTATATTTAATACAATCTGAAGAACCAGCA
 
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rJMFF029H13+          AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCAC               
rJMSF042L18+          AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACT              
JMFS082G10-           AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT
                      ____________________________________________________________
consensus             AAATGTGCTGTACTGTGTTGTGCGTTTTTGGAATGTTCTTAGCACTTAAAGATTGTGTTT