Contig 010472:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS004E05Sequence570010472 (3)ref|XP_009612584.1|3e-17PREDICTED: zinc finger CCCH domain-containing protein 41 [Nicotiana tomentosifo
JMFS081D02Sequence563010472 (3)ref|XP_009612584.1|7e-15PREDICTED: zinc finger CCCH domain-containing protein 41 [Nicotiana tomentosifo
JMFS100C12Sequence616010472 (3)ref|XP_009598719.1|1e-16PREDICTED: zinc finger CCCH domain-containing protein 41-like [Nicotiana toment

Alignment

This contig is upended


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JMFS100C12+                                           AATCACGTTGGCCCCATATACCTGGTTC
                      ____________________________________________________________
consensus                                             AATCACGTTGGCCCCATATACCTGGTTC
 
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JMFS100C12+           CCTTCCGCGAGCTCTGCCAGGACCAGGTTCTCCAGACAGTGATTGGTTTGACCTTATTCT
JMFS004E05+                               GACCAGGTTCTCCAGACAGTGATTGGTTTGACCTTATTCT
JMFS081D02+                                                AGTGATTGGTTTGACCTTATTCT
                      ____________________________________________________________
consensus             CCTTCCGCGAGCTCTGCCAGGACCAGGTTCTCCAGACAGTGATTGGTTTGACCTTATTCT
 
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JMFS100C12+           AAGGTTGGAATCGTATTGAGGTCGGGAAAATGAATTCATGCCTCTTCTTTGTACACTCTG
JMFS004E05+           AAGGTTGGAATCGTATTGAGGTCGGGAAAATGAATTCATGCCTCTTCTTTGTACACTCTG
JMFS081D02+           AAGGTTGGAATCGTATTGAGGTCGGGAAAATGAATTCATGCCTCTTCTTTGTACACTCTG
                      ____________________________________________________________
consensus             AAGGTTGGAATCGTATTGAGGTCGGGAAAATGAATTCATGCCTCTTCTTTGTACACTCTG
 
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JMFS100C12+           TTCTTTCTCAAAAGAAGCAGATTCAGAATCCTTGTAAAGGTGTCCATTTCCAATGGGCTT
JMFS004E05+           TTCTTTCTCAAAAGAAGCAGATTCAGAATCCTTGTAAAGGTGTCCATTTCCAATGGGCTT
JMFS081D02+           TTCTTTCTCAAAAGAAGCAGATTCAGAATCCTTGTAAAGGTGTCCATTTCCAATGGGCTT
                      ____________________________________________________________
consensus             TTCTTTCTCAAAAGAAGCAGATTCAGAATCCTTGTAAAGGTGTCCATTTCCAATGGGCTT
 
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JMFS100C12+           GTTGCGCTTCCTGTAGGGTCTCGTCAGAACTGATTCAAAAGGATCAGTGTCAACAGACTC
JMFS004E05+           GTTGCGCTTCCTGTAGGGTCTCGTCAGAACTGATTCAAAAGGATCAGTGTCAACAGACTC
JMFS081D02+           GTTGCGCTTCCTGTAGGGTCTCGTCAGAACTGATTCAAAAGGATCAGTGTCAACAGACTC
                      ____________________________________________________________
consensus             GTTGCGCTTCCTGTAGGGTCTCGTCAGAACTGATTCAAAAGGATCAGTGTCAACAGACTC
 
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JMFS100C12+           AGAATGTGTCTCCCTCCTGCGATGCTTATGATTACGATCATCATCATCATCTTCACTGAT
JMFS004E05+           AGAATGTGTCTCCCTCCTGCGATGCTTATGATTACGATCATCATCATCATCTTCACTGAT
JMFS081D02+           AGAATGTGTCTCCCTCCTGCGATGCTTATGATTACGATCATCATCATCATCTTCACTGAT
                      ____________________________________________________________
consensus             AGAATGTGTCTCCCTCCTGCGATGCTTATGATTACGATCATCATCATCATCTTCACTGAT
 
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JMFS100C12+           TTCTTTCTCTTCAGGATCACTATTACAATCAGAAGATGAAAGAACTAGCTTTGGAGATGA
JMFS004E05+           TTCTTTCTCTTCAGGATCACTATTACAATCAGAAGATGAAAGAACTAGCTTTGGAGATGA
JMFS081D02+           TTCTTTCTCTTCAGGATCACTATTACAATCAGAAGATGAAAGAACTAGCTTTGCAGATGA
                      ____________________________________________________________
consensus             TTCTTTCTCTTCAGGATCACTATTACAATCAGAAGATGAAAGAACTAGCTTTGGAGATGA
 
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JMFS100C12+           AACTTTTAGCTCCATGAATTAAAGTGGTCAAACTTAATTTATGAAGTCAAAAACTTCATA
JMFS004E05+           AACTTTTAGCTCCATGAATTAAAGTGGTCAAACTTAATTTATGAAGTCAAAAACTTCATA
JMFS081D02+           AACTTTTAGCTCCATGAATTAAAGTGGTCAAACTTAATTTATGAAGTCAAAAACTTCATA
                      ____________________________________________________________
consensus             AACTTTTAGCTCCATGAATTAAAGTGGTCAAACTTAATTTATGAAGTCAAAAACTTCATA
 
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JMFS100C12+           TTCCAGGCAAAAATGCAGCTACTGGAAATAATTCATTGGGCAAAGCCAATTCAGCATTCT
JMFS004E05+           TTCCAGGCAAAAATGCAGCTACTGGAAATAATTCATTGGGCAAACCCAATTCAGCATTCT
JMFS081D02+           TTCCAGGCAAAAATGCAGCTACTGGAAATAATTCATTGGGCAAAGCCAATTCAGCATTCT
                      ____________________________________________________________
consensus             TTCCAGGCAAAAATGCAGCTACTGGAAATAATTCATTGGGCAAAGCCAATTCAGCATTCT
 
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JMFS100C12+           CCTGTCCCTCCTACGTATAAATTGGCGTCTTAGGGTTTCGATTTCCCCAATCAAAATTCG
JMFS004E05+           CCTGTCCCTCCTACGTATAAATTGGCGTCTTAGGGTTTCGATTTCCCCAATCAAAATTCG
JMFS081D02+           CCTGTCCCTCCTACGTATAAATTGGCGTCTTAGGGTTTCGATTTCCCCAATCAAAATTCG
                      ____________________________________________________________
consensus             CCTGTCCCTCCTACGTATAAATTGGCGTCTTAGGGTTTCGATTTCCCCAATCAAAATTCG
 
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JMFS100C12+           AATGCGTGGGAGTCCAGTAACAGGCAGGCCGTACTTTGGGCTTCTTGC            
JMFS004E05+           AATGCGTGGGAGTCCAGTAACAGGCAGGCCGTACTTTGGGCTTCTTGC            
JMFS081D02+           AATGCGTGGGAGTCCAGTAACAGGCAGGCCGTACTTTGGGCTTCTTGCCTTCCTGGTATA
                      ____________________________________________________________
consensus             AATGCGTGGGAGTCCAGTAACAGGCAGGCCGTACTTTGGGCTTCTTGCCTTCCTGGTATA