Contig 010467:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF050B24Sequence475010467 (3)ref|NP_001067224.1|5e-44Os12g0605400 [Oryza sativa Japonica Group] gb|ABA99827.1| Ubiquitin-conjugating 546010467 (3)emb|CDP06865.1|2e-72unnamed protein product [Coffea canephora]
JMFS067B09Sequence627010467 (3)emb|CDP06865.1|2e-92unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFS067B09+                                            AGAACATGAAGGAAAACTATTTACGGG
                      ____________________________________________________________
consensus                                              AGAACATGAAGGAAAACTATTTACGGG
 
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JMFS067B09+           GTGCGCATGCCATATGAGAAATCGAGCCTATTGTTGTCCAGCTTTCGATGATGCAGACAG
                      ____________________________________________________________
consensus             GTGCGCATGCCATATGAGAAATCGAGCCTATTGTTGTCCAGCTTTCGATGATGCAGACAG
 
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rJMFF050B24-                                    ATCAGAAGAAGGTTCCTTCTGGGGGTTGAACGAG
JMFS067B09+           GCAGGCGGTTCTCAGTGGCTAACGTGATCAGAAGAAGGTTCCTTCTGGGGGTTGAACGAG
                      ____________________________________________________________
consensus             GCAGGCGGTTCTCAGTGGCTAACGTGATCAGAAGAAGGTTCCTTCTGGGGGTTGAACGAG
 
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rJMFF050B24-          CTTACGGTTGTGTGGTGCAGCCATTTCTTTTCTCAACTGTGTCAAGACACCCTCCATCGT
JMFS067B09+           CTTACGGTTGTGTGGTGCAGCCATTTCTTTTCTCAACTGTGTCAAGACACCCTCCATCGT
                      ____________________________________________________________
consensus             CTTACGGTTGTGTGGTGCAGCCATTTCTTTTCTCAACTGTGTCAAGACACCCTCCATCGT
 
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rJMFF050B24-          GTACTCACGCTGCCAACTCACCAGCATACCGAACTTCTTTGCTTCCACCACTCCAGTCTC
JMFS067B09+           GTACTCACGCTGCCAACTCACCAGCATACCGAACTTCTTTGCTTCCACCACTCCAGTCTC
                      ____________________________________________________________
consensus             GTACTCACGCTGCCAACTCACCAGCATACCGAACTTCTTTGCTTCCACCACTCCAGTCTC
 
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rJMFF050B24-          GGGGTTCACACAAGTCATGTTGACACGGGAATGGAAGCGAACGGTTGGAGGCTTATCGGG
JMFF050B24+                                                         GGAGGCTGATCGGG
JMFS067B09+           GGGGTTCACACAAGTCATGTTGACACGGGAATGGAAGCGAACGGTTGGAGGCTTATCGGG
                      ____________________________________________________________
consensus             GGGGTTCACACAAGTCATGTTGACACGGGAATGGAAGCGAACGGTTGGAGGCTTATCGGG
 
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rJMFF050B24-          ATAATCTTTGTCACAAAACAGCTTGAGTTGATAAATACGTCCCTCGTGCACGGTGTTATG
JMFF050B24+           ATAATCTTGGTCACAAAACAGCGTGAGTTGATAAATGCGTCCATCGTGCACGGTGTTATG
JMFS067B09+           ATAATCTTTGTCACAAAACAGCTTGAGTTGATAAATACGTCCCTCGTGCACGGTGTTATG
                      ____________________________________________________________
consensus             ATAATCTTTGTCACAAAACAGCTTGAGTTGATAAATACGTCCCTCGTGCACGGTGTTATG
 
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rJMFF050B24-          AGGACCAATTATGGTACCCGTCCAAGAACGCATGTAAATATCGTCAGCATCATCCATTCC
JMFF050B24+           AGGACCAATTATGGTACCCGTCCAAGAACGCATGTAAATATCGTCAGCATCAGCCATTCC
JMFS067B09+           AGGACCAATTATGGTACCCGTCCAAGAACGCATGTAAATATCGTCAGCATCATCCATTCC
                      ____________________________________________________________
consensus             AGGACCAATTATGGTACCCGTCCAAGAACGCATGTAAATATCGTCAGCATCATCCATTCC
 
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JMFF050B24+           ATAGCGGACAGAACCATCTCCAGTACCTTTCTCACGCCGTTCAAGCTCCTTGAGCAACGT
JMFS067B09+           ATAGCTGACAGAACCATCTCCAATACCTTTCTCACCCCGTTCAAGCTCCTCGAGCAACCT
                      ____________________________________________________________
consensus             ATAGCTGACAGAACCATCTCCAGTACCTTTCTCACGCCGTTCAAGCTCCTTGAGCAACGT
 
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JMFF050B24+           AAAATTGCGAG                                                 
JMFS067B09+           AAAATTGCGAGGAACGACAACACTAGATCCTCCTGAACCGAGTGCCATTTTCTGGACCAG
                      ____________________________________________________________
consensus             AAAATTGCGAGGAACGACAACACTAGATCCTCCTGAACCGAGTGCCATTTTCTGGACCAG
 
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JMFS067B09+           AGATTAAAGGCGTAAAGATCAAATCTTGGGAGGGGGGTTTGGGAAGAACGCGACTGCAAA
                      ____________________________________________________________
consensus             AGATTAAAGGCGTAAAGATCAAATCTTGGGAGGGGGGTTTGGGAAGAACGCGACTGCAAA