Contig 010449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS048F11Sequence624010449 (4)ref|XP_009595268.1|1e-66PREDICTED: ribonucleoside-diphosphate reductase large subunit [Nicotiana toment
JMFS116C08Sequence562010449 (4)ref|XP_010555306.1|1e-67PREDICTED: ribonucleoside-diphosphate reductase large subunit [Tarenaya hassler
JMSF040D23Sequence667010449 (4)ref|XP_010555306.1|5e-113PREDICTED: ribonucleoside-diphosphate reductase large subunit [Tarenaya hassler860007228 (2)ref|XP_006357341.1|1e-159PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Solanum tub
JMSF048E21Sequence690010449 (4)ref|XP_010555306.1|7e-119PREDICTED: ribonucleoside-diphosphate reductase large subunit [Tarenaya hassler682007228 (2)ref|XP_006357341.1|1e-120PREDICTED: ribonucleoside-diphosphate reductase large subunit-like [Solanum tub

Alignment

This contig is upended


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JMSF048E21+                                    CTTGGAGTTCCACCATTAAAAAGAGTTGGGGATGC
JMSF040D23+                                                            GTTGGGGATGC
                      ____________________________________________________________
consensus                                      CTTGGAGTTCCACCATTAAAAAGAGTTGGGGATGC
 
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JMSF048E21+           ATGTGTGAACCATCTTTGAGACATTAAATGGTACGTCTTGATGGCAGATTCAATATTATC
JMSF040D23+           ATGTGTGAACCATCTTTGAGACATTAAATGGTACGTCTTGATGGCAGATTCAATATTATC
                      ____________________________________________________________
consensus             ATGTGTGAACCATCTTTGAGACATTAAATGGTACGTCTTGATGGCAGATTCAATATTATC
 
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JMSF048E21+           CTTGTGGATCCCAACAGCAACTCTCATCAACATATGTTGTGGCCTCTCAACAACTTTGCC
JMSF040D23+           CTTGTGGATCCCAACAGCAACTCTCATCAACATATGTTGTGGCCTCTCAACAACTTTGCC
                      ____________________________________________________________
consensus             CTTGTGGATCCCAACAGCAACTCTCATCAACATATGTTGTGGCCTCTCAACAACTTTGCC
 
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JMSF048E21+           TTGAACCTTTAAGAGGTAAGATCTCTCAAGTGTTTTGAAACCAAAGTAATCATAGTCAAA
JMSF040D23+           TTGAACCTTTAAGAGGTAAGATCTCTCAAGTGTTTTGAAACCAAAGTAATCATAGTCAAA
                      ____________________________________________________________
consensus             TTGAACCTTTAAGAGGTAAGATCTCTCAAGTGTTTTGAAACCAAAGTAATCATAGTCAAA
 
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JMSF048E21+           GTCTCGGTCGTATATGATCTCACTGTCCAGACGAGAAGCATTCTTCATGATTATCTCATA
JMFS116C08+                                                     CTTCATGATTATCTCATA
JMSF040D23+           GTCTCGGTCGTATATGATCTCACTGTCCAGACGAGAAGCATTCTTCATGATTATCTCATA
JMFS048F11+                                                     CTTCATGATTATCTCATA
                      ____________________________________________________________
consensus             GTCTCGGTCGTATATGATCTCACTGTCCAGACGAGAAGCATTCTTCATGATTATCTCATA
 
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JMSF048E21+           AACATCATCAGCTATGAGAGGTGATTTTAGTCCAGATCTCTCATTGACATGGTAATACAT
JMFS116C08+           AACATCATCAGCTATGAGAGGTGATTTTAGTCCAGATCTCTCATTGACATGGTAATACAT
JMSF040D23+           AACATCATCAGCTATGAGAGGTGATTTTAGTCCAGATCTCTCATTGACATGGTAATACAT
JMFS048F11+           AACATCATCAGCAATGAGAGGCGCTTTAAGTCCAGATCTCTCACTGATATGGTAATACAT
                      ____________________________________________________________
consensus             AACATCATCAGCTATGAGAGGTGATTTTAGTCCAGATCTCTCATTGACATGGTAATACAT
 
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JMSF048E21+           GTCTTTGACAGTCTCAGAAAATGACTTCTTGGTATTTTTATGGAGATTAGAAACAGCAAT
JMFS116C08+           GTCTTTGACAGTCTCAGAAAATGACTTCTTGGTATTTTTATGGAGATTAGAAACAGCAAT
JMSF040D23+           GTCTTTGACAGTCTCAGAAAATGACTTCTTGGTATTTTTATGGAGATTAGAAACAGCAAT
JMFS048F11+           GTCTTTAACCGTCTCAGAAAATGATTTCTTAGTATTACTGTGGAGATTAGAAACAGCAAT
                      ____________________________________________________________
consensus             GTCTTTGACAGTCTCAGAAAATGACTTCTTGGTATTTTTATGGAGATTAGAAACAGCAAT
 
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JMSF048E21+           CCGTGCCGCCAAAGATGCATAGTCAGGGTGGTTAGCAGTCATGGCTGCTGCAGTCTCGGC
JMFS116C08+           CCGTGCCGCCAAAGATGCATAGTCAGGGTGGTTAGCAGTCATGGCTGCTGCAGTCTCGGC
JMSF040D23+           CCGTGCCGCCAAAGATGCATAGTCAGGGTGGTTAGCAGTCATGGCTGCTGCAGTCTCGGC
JMFS048F11+           CCTTGCTGCCAAAGATGCGTAGTCAGGGTGGTTAGTGGTCATGGCGGCTGCGGTCTCTGC
                      ____________________________________________________________
consensus             CCGTGCCGCCAAAGATGCATAGTCAGGGTGGTTAGCAGTCATGGCTGCTGCAGTCTCGGC
 
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JMSF048E21+           GGCCAATTCATCTAGTTGGCTCGTTGTAACACCCTTATAGACACCGGCACATACTTTCTG
JMFS116C08+           GGCCAATTCATCTAGTTGGCTCGTTGTAACACCCTTATAGACACCGGCACATACTTTCTG
JMSF040D23+           GGCCAATTCATCTAGTTGGCTCGTTGTAACACCCTTATAGACACCGGCACATACTTTCTG
JMFS048F11+           GGCCAATTCGTCGAGCTGGCTAGTGGTGACACCCTTGTAGACGCCCGCACAGACCTTCTG
                      ____________________________________________________________
consensus             GGCCAATTCATCTAGTTGGCTCGTTGTAACACCCTTATAGACACCGGCACATACTTTCTG
 
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JMSF048E21+           GGAAACAAGTACCGGGTCACAATGCTCAGGACTGAGCCCGTAGCTAAGCTTCTTAAGCCT
JMFS116C08+           GGAAACAAGTACCGGGTCACAATGCTCAGGACTGAGCCCGTAGCTAAGCTTCTTAAGCCT
JMSF040D23+           GGAAACAAGTACCGGGTCACAATGCTCAGGACTGAGCCCGTAGCTAAGCTTCTTAAGCCT
JMFS048F11+           GGCAACAAGCACGGGGTCACAGTGGTCGGGGCTGAGTCGATAGCTCAACTTCTTAAGCCT
                      ____________________________________________________________
consensus             GGAAACAAGTACCGGGTCACAATGCTCAGGACTGAGCCCGTAGCTAAGCTTCTTAAGCCT
 
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JMSF048E21+           AGCGGTGATCTTGTCGAAGTGCACCGCCTCCTGACGCCCATCTCTCTT            
JMFS116C08+           AGCGGTGATCTTGTCGAAGTGCACCGCCTCCTGACGCCCATCTCTCTT            
JMSF040D23+           AGCGGTGATCTTGTCGAAGTGCACCGCCTCCTGACGCCCATCTCTCTT            
JMFS048F11+           AGCGGTGATCTTGTCAAAGTGCACGGCCTCCTGACGCCCATCTCTCTTGATCACATACAT
                      ____________________________________________________________
consensus             AGCGGTGATCTTGTCGAAGTGCACCGCCTCCTGACGCCCATCTCTCTTGATCACATACAT
 
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JMFS048F11+           CTCTCCGATCAGGACTTTTGTCAAACAGCTCTGATTCAGACTAGAACCGGTAGCAATGAT
                      ____________________________________________________________
consensus             CTCTCCGATCAGGACTTTTGTCAAACAGCTCTGATTCAGACTAGAACCGGTAGCAATGAT
 
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JMFS048F11+           CGTTCTTTACTTCTTTCTTGGTGATGATCGTGAACTGAGCGGGATATGTGTTGGTGTATA
                      ____________________________________________________________
consensus             CGTTCTTTACTTCTTTCTTGGTGATGATCGTGAACTGAGCGGGATATGTGTTGGTGTATA
 
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JMFS048F11+           TATGTATAAGTTGAGATTTAGGGTTTTGATTTTTTGAAGTTTCCCTCCTCGGAAGGAGAG
                      ____________________________________________________________
consensus             TATGTATAAGTTGAGATTTAGGGTTTTGATTTTTTGAAGTTTCCCTCCTCGGAAGGAGAG
 
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JMFS048F11+           TAGGTNTGAATTTCCCCGCCAAAGAATGGAATGGCGGGCAAAATTGAAGAGTGCGTAGCC
                      ____________________________________________________________
consensus             TAGGTNTGAATTTCCCCGCCAAAGAATGGAATGGCGGGCAAAATTGAAGAGTGCGTAGCC