Contig 010447:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS011H12Sequence594010447 (4)ref|XP_009627896.1|3e-35PREDICTED: synaptotagmin-4 [Nicotiana tomentosiformis]
JMFS047A09Sequence607010447 (4)ref|XP_009627896.1|2e-34PREDICTED: synaptotagmin-4 [Nicotiana tomentosiformis]
JMFS067B04Sequence624010447 (4)ref|XP_009627896.1|9e-55PREDICTED: synaptotagmin-4 [Nicotiana tomentosiformis]
JMFS076E01Sequence616010447 (4)ref|XP_009627896.1|1e-37PREDICTED: synaptotagmin-4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS067B04+                                                                    ACC
                      ____________________________________________________________
consensus                                                                      ACC
 
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JMFS067B04+           AAGTGAAAATTCTTGTAATTCAATCTTTTCAATGATCCTCGGTTTCCGATGCTTCAAACG
                      ____________________________________________________________
consensus             AAGTGAAAATTCTTGTAATTCAATCTTTTCAATGATCCTCGGTTTCCGATGCTTCAAACG
 
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JMFS067B04+           TCTCTCAATCATGTAAGAGAACCTCAAAGACATCCTTTTGCCGATGTAGTTCTGCCAAAT
JMFS011H12+                                                       TGTAGTTCTGCCAAAT
JMFS076E01+                                                       TGTAGTTCTGCCAAAT
JMFS047A09+                                                                GCCAAAT
                      ____________________________________________________________
consensus             TCTCTCAATCATGTAAGAGAACCTCAAAGACATCCTTTTGCCGATGTAGTTCTGCCAAAT
 
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JMFS067B04+           TTCCAATAGTAGCTTGTTTAGCCACTCACATTGTTCCAAAGGTGTAGCTTGTGAATTTTG
JMFS011H12+           TTCCAATAGTAGCTTGTTTAGCCACTCACATTGTTCCAAAGGTGTAGCTTGTGAATTTGN
JMFS076E01+           TTCCAATAGTAGCTTGTTTAGCCACTCACATTGTTCCAAAGGTGTAGCTTGTGAATTTTG
JMFS047A09+           TTCCAATAGTAGCTTGTTTAGCCACTCACATTGTTCCAAAGGTGTAGCTTGTGAATTTTG
                      ____________________________________________________________
consensus             TTCCAATAGTAGCTTGTTTAGCCACTCACATTGTTCCAAAGGTGTAGCTTGTGAATTTTG
 
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JMFS067B04+           CAGCAATGTTTGCATCCATTTCTTATTCAAGTCTTCTGTAAGGATGTGGCGTTGATAACG
JMFS011H12+           CAGCAATGTTTGCATCCATTTCTTAGTCAAGTCTTCTGTAAGGATGTGGCGTTGATAACG
JMFS076E01+           CAGCAATGTTTGCATCCATTTCTTATTCAAGTCTTCTGTAAGGATGTGGCGTTGATAACG
JMFS047A09+           CAGCAATGTTTGCATCCATTTCTTATTCAAGTCTTCTGTAAGGATGTGGCGTTGATAACG
                      ____________________________________________________________
consensus             CAGCAATGTTTGCATCCATTTCTTATTCAAGTCTTCTGTAAGGATGTGGCGTTGATAACG
 
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JMFS067B04+           TGTGTACTGAAAAGCAGCCCAGACAGCAAAAGCAAGAGGAACCCAATTTGAGAGGTTGAA
JMFS011H12+           TGTGTACTGAAAAGCAGCCCAGACAGCAAAAGCAAGAGGAACCCAATTTGAGAGGTTGAA
JMFS076E01+           TGTGTACTGAAAAGCAGCCCAGACAGCAAAAGCAAGAGGAACCCAATTTGAGAGGTTGAA
JMFS047A09+           TGTGTACTGAAAAGCAGCCCAGACAGCAAAAGCAAGAGGAACCCAATTTGAGAGGTTGAA
                      ____________________________________________________________
consensus             TGTGTACTGAAAAGCAGCCCAGACAGCAAAAGCAAGAGGAACCCAATTTGAGAGGTTGAA
 
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JMFS067B04+           AAACCACTTCTCAATTCCCCAAACCATTAAGAACAACAGAACCAGGACAGGAAGAAGAGG
JMFS011H12+           AAACCACTTCTCAATTCCCCAAACCATTAAGAACAACAGAACCAGGACAGGAAGAAGAGG
JMFS076E01+           AAACCACTTCTCAATTCCCCAAACCATTAAGAACAACAGAACCAGGACAGGAAGAAGAGG
JMFS047A09+           AAACCACTTCTCAATTCCCCAAACCATTAAGAACAACAGAACCAGGACAGGAAGAAGAGG
                      ____________________________________________________________
consensus             AAACCACTTCTCAATTCCCCAAACCATTAAGAACAACAGAACCAGGACAGGAAGAAGAGG
 
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JMFS067B04+           CTTTTCTGCCATCAAATTATTCAAGGACTCCATAGCTTCACTCACACTAAAACTCTTCCT
JMFS011H12+           CTTTTCTGCCATCAAATTATTCAAGGACTCCATAGCTTCACTCACACTAAAACTCTTCCT
JMFS076E01+           CTTTTCTGCCATCAAATTATTCAAGGACTCCATAGCTTCACTCACACTAAAACTCTTCCT
JMFS047A09+           CTTTTCTGCCATCAAATTATTCAAGGACTCCATAGCTTCACTCACACTAAAACTCTTCCT
                      ____________________________________________________________
consensus             CTTTTCTGCCATCAAATTATTCAAGGACTCCATAGCTTCACTCACACTAAAACTCTTCCT
 
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JMFS067B04+           TCTCTTCCCCATTTCTAATTAATTTTAAGCCCCACTAATTCAATTCAGAAGATACTCAAT
JMFS011H12+           TCTCTTCCCCATTTCTAATTAATTTTAAGCCCCACTAATTCAATTCAGAAGATACTCAAT
JMFS076E01+           TCTCTTCCCCATTTCTAATTAATTTTAAGCCCCACTAATTCAATTCAGAAGATACTCAAT
JMFS047A09+           TCTCTTCCCCATTTCTAATTAATTTTAAGCCCCACTAATTCAATTCAGAAGATACTCAAT
                      ____________________________________________________________
consensus             TCTCTTCCCCATTTCTAATTAATTTTAAGCCCCACTAATTCAATTCAGAAGATACTCAAT
 
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JMFS067B04+           GAACCCAAATTTCTCAACGCTCACACTTCGTTTCAATCCTCCGTTTCATAAAAACAAGAA
JMFS011H12+           GAACCCAAATTTCTCAACGCTCACACTTCGTTTCAATCCTCCGTTTCATAAAAACAAGAA
JMFS076E01+           GAACCCAAATTTCTCAACGCTCACACTTCGTTTCAATCCTCCGTTTCATAAAAACAAGAA
JMFS047A09+           GAACCCAAATTTCTCAACGCTCACACTTCGTTTCAATCCTCCGTTTCATAAAAACAAGAA
                      ____________________________________________________________
consensus             GAACCCAAATTTCTCAACGCTCACACTTCGTTTCAATCCTCCGTTTCATAAAAACAAGAA
 
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JMFS067B04+           CACCCAATTCCCAAAGACTCGAACTTTTTCAAAATTTCAAATGATCAAGCATCATCCGTA
JMFS011H12+           CACCCAATTCCCAAAGACTCGAACTTTTTCAAAATTTCAAATGATCAAGCATCATCCGTA
JMFS076E01+           CACCCAATTCCCAAAGACTCGAACTTTTTCAAAATTTCAAATGATCAAGCATCATCCGTA
JMFS047A09+           CACCCAATTCCCAAAGACTCGAACTTTTTCAAAATTTCAAATGATCAAGCATCATCCGTA
                      ____________________________________________________________
consensus             CACCCAATTCCCAAAGACTCGAACTTTTTCAAAATTTCAAATGATCAAGCATCATCCGTA
 
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JMFS067B04+           GACCCACAACTCAAAACGGAA                                       
JMFS011H12+           GACCCACAACTCAAAACGGAATTACAATACGCTTTGCAGCCATTCCCATTGACGGCGAGA
JMFS076E01+           GACCCACAACTCAAAACGGAATTACAATACGCTTTGCAGCCATTCCCATTGACGGCGAGA
JMFS047A09+           GACCCACAACTCAAAACGGAATTACAATACGCTTTGCAGCCATTCCCATTGACGGCGAGA
                      ____________________________________________________________
consensus             GACCCACAACTCAAAACGGAATTACAATACGCTTTGCAGCCATTCCCATTGACGGCGAGA
 
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JMFS011H12+           TTGGAGAGAGGGTACGAGAAAA                                      
JMFS076E01+           TTGGAGAGAGGGTACGAGAAAAGACGGAGTCAACAAAA                      
JMFS047A09+           TTGGAGAGAGGGTACGAGAAAAGACGGAGTCAACAAAACAAGACAAATCCGTAGGAGTTA
                      ____________________________________________________________
consensus             TTGGAGAGAGGGTACGAGAAAAGACGGAGTCAACAAAACAAGACAAATCCGTAGGAGTTA