Contig 010445:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF032M08Sequence556000830 (5)emb|CDP07933.1|9e-40unnamed protein product [Coffea canephora]712010445 (4)ref|XP_004236893.1|4e-11PREDICTED: zinc finger CCCH domain-containing protein 17-like [Solanum lycopers
JMFN012D09Sequence624010445 (4)ref|XP_009759890.1|1e-48PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana sylves
JMFS045A08Sequence500010445 (4)emb|CDP07933.1|4e-41unnamed protein product [Coffea canephora]
JMSF031O20Sequence660000830 (5)ref|XP_009623001.1|2e-45PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana toment689010445 (4)ref|XP_009759890.1|3e-12PREDICTED: zinc finger CCCH domain-containing protein 17-like [Nicotiana sylves

Alignment

This contig is upended


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rJMFF032M08-                          TAGAGCATACAAAAAGTGAGTTAACAAATACCTCAAGACTCTAA
                      ____________________________________________________________
consensus                             TAGAGCATACAAAAAGTGAGTTAACAAATACCTCAAGACTCTAA
 
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rJMFF032M08-          AGACCAAAGCAAAGTGGCTCAAAGGAGTGTTAAAAAGAGATGACTATAAAAGATCAAATT
                      ____________________________________________________________
consensus             AGACCAAAGCAAAGTGGCTCAAAGGAGTGTTAAAAAGAGATGACTATAAAAGATCAAATT
 
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rJMFF032M08-          ATTATTAGACAAATCTAATGTTACGGCCATGACCCTTTGGGCAATGCTAAATGATAAAAA
rJMSF031O20-                                       TGACCCTTTGGGCAATGCTAAATGATAAAAA
                      ____________________________________________________________
consensus             ATTATTAGACAAATCTAATGTTACGGCCATGACCCTTTGGGCAATGCTAAATGATAAAAA
 
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rJMFF032M08-          TGCAAGAGCCATCCATGGATGAGGAAATGACCCCATCCCATCTGAGAAAAACAATTTCTA
rJMSF031O20-          TGCAAGAGCCATCCATGGATGAGGAAATGACCCCATCCCATCTGAGAAAAACAATTTCTA
                      ____________________________________________________________
consensus             TGCAAGAGCCATCCATGGATGAGGAAATGACCCCATCCCATCTGAGAAAAACAATTTCTA
 
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rJMFF032M08-          ATAGTACAAAGAGTAAT-AAAAAAAAATGTAAAATAAGAATGATTCCTCTACTTCTAATG
rJMSF031O20-          ATAGTACAAAGAGTAATAAAAAAAAAATGTAAAATAAGAATGATTCCTCTACTTCTAATG
                      ____________________________________________________________
consensus             ATAGTACAAAGAGTAATAAAAAAAAAATGTAAAATAAGAATGATTCCTCTACTTCTAATG
 
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rJMFF032M08-          ACAAAATCAGTAGAGAGCCTGTTGAATTGCTCATCTGGTGCCAAGCTAAGGGGGCGGGCT
rJMSF031O20-          ACAAAATCAGTAGAGAGCCTGTTGAATTGCTCATCTGGNGCCAAGCTAAGGGGGCGGGCT
                      ____________________________________________________________
consensus             ACAAAATCAGTAGAGAGCCTGTTGAATTGCTCATCTGGTGCCAAGCTAAGGGGGCGGGCT
 
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rJMFF032M08-          CGTGAAGGCTACAGGAAACCAAGCGCAACGGTAATTGAAGAATATCATATCTCTATTTTA
rJMSF031O20-          CGTGAAGGCTACAGGAAACCAAGCGCAACGGTAATTGAAGAATATCATATCTCTATTTTA
                      ____________________________________________________________
consensus             CGTGAAGGCTACAGGAAACCAAGCGCAACGGTAATTGAAGAATATCATATCTCTATTTTA
 
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rJMFF032M08-          CGAGAAGACGACAGCCATCTTCTTTGCAAAATCGTCAGCATCGTCGTCGTCTTCCAGGTA
rJMSF031O20-          CGAGAAGACGACAGCCATCTTCTTTGCAAAATCGTCAGCATCGTCGTCGTCTTCCAGGTA
                      ____________________________________________________________
consensus             CGAGAAGACGACAGCCATCTTCTTTGCAAAATCGTCAGCATCGTCGTCGTCTTCCAGGTA
 
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rJMFF032M08-          TTCCTCATCTTGGTCTCCATTCTCAGCTTCATCTAAATTAACATCTTCCCCATCAACCTG
rJMSF031O20-          TTCCTCATCTTGGTCTCCATTCTCAGCTTCATCTAAATTAACATCTTCCCCATCAACCTG
JMFN012D09+                      GGTCTCCATTCTCAGCTTCATCTAAATTAACATCTTCCCCATCAACCTG
                      ____________________________________________________________
consensus             TTCCTCATCTTGGTCTCCATTCTCAGCTTCATCTAAATTAACATCTTCCCCATCAACCTG
 
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rJMFF032M08-          CTCGTAATTGTAGTCCCCATCTTGTGGATCGTAGCCTTCGCCATCTTGATACTCCCCTTC
rJMSF031O20-          CTCGTAATTGTAGTCCCCATCTTGNGGATCGTAGCCTTCGCCATCTTGATACTCCCCTTC
JMFN012D09+           CTCGTAATTGTAGTCCCCATCTTGTGGATCGTAGCCTTCGCCATCTTGATACTCCCCTTC
                      ____________________________________________________________
consensus             CTCGTAATTGTAGTCCCCATCTTGTGGATCGTAGCCTTCGCCATCTTGATACTCCCCTTC
 
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rJMFF032M08-          ATCAGCTAGCATTCCATCTTCAACTTCAAGATCCTCAGCTGATTTATTTTCGAGTACACC
rJMSF031O20-          ATCAGCTAGCATTCCATCTTCAACTTCAAGATCCTCAGCTGATTTATTTTCGAGTACACC
JMFN012D09+           ATCAGCTAGCATTCCATCTTCAACTTCAAGATCCTCAGCTGATTTATTTTCGAGTACACC
                      ____________________________________________________________
consensus             ATCAGCTAGCATTCCATCTTCAACTTCAAGATCCTCAGCTGATTTATTTTCGAGTACACC
 
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rJMFF032M08-          AGTGTTGTTGCCTGATGGAGGCTGAAAGTCTTCCTTCTGAGCTGCTGCATGGTCAGCTTC
rJMSF031O20-          AGTGTTGTTGCCTGATGGAGGCTGAAAGTCTTCCTTCTGAGCTGCTGCATGGTCAGCTTC
JMFN012D09+           AGTGTTGTTGCCTGATGGAGGCTGAAAGTCTTCCTTCTGAGCTGCTGCATGGTCAGCTTC
                      ____________________________________________________________
consensus             AGTGTTGTTGCCTGATGGAGGCTGAAAGTCTTCCTTCTGAGCTGCTGCATGGTCAGCTTC
 
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rJMFF032M08-          ATTCTTGTG                                                   
rJMSF031O20-          ATTCTTGTGTGAAGAGTAAGGTTCCATCGTTGTGGTTCTTTCCTGTTGGTTATAGTCTTC
JMFN012D09+           ATTCTTGTGTGAAGAGTAAGGTTCCATCGTTGTGGTTCTTTCCTGTTGGTTATAGTCTTC
JMFS045A08+                                                   TCCTGTTGGTTATAGTTTTC
                      ____________________________________________________________
consensus             ATTCTTGTGTGAAGAGTAAGGTTCCATCGTTGTGGTTCTTTCCTGTTGGTTATAGTCTTC
 
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rJMSF031O20-          ATTCTCACCAGCTCTTCTTTTCCGCTTT-AAATCTCTTTTAAAGGCTTTGGCCCTTCAA 
JMFN012D09+           ATTCTCACCAGCTCTTCTTTTCCGCTTTAAAATCTCTTTTAAAGGCTTTGGCCCTTCAAA
JMFS045A08+           ATTCTCACCAGCTTTTCTTTTCCGCTTTAAAATCTCTTTTAAAGGCTTTGGCCCTTCAAA
                      ____________________________________________________________
consensus             ATTCTCACCAGCTCTTCTTTTCCGCTTTAAAATCTCTTTTAAAGGCTTTGGCCCTTCAAA
 
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JMFN012D09+           TGACAGATCCCCTCCAGATTGCTGCTGGTCATCAAACTTTTGGAGCTTCCTTTTCCCTAG
JMFS045A08+           TGACAGATCCCCTCCAGATTGCTGTTGGTCATCAAACTTTTGGAGCTTCCTTTTCCCTAG
                      ____________________________________________________________
consensus             TGACAGATCCCCTCCAGATTGCTGTTGGTCATCAAACTTTTGGAGCTTCCTTTTCCCTAG
 
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JMFN012D09+           GGACTGTGGCCCATTGCCTTCAATGCCGCCCTTCTTTCCTTTCAGTTCTGCTAGACTTTT
JMFS045A08+           GGACTGTGGCCCATTGCCTTCAATGCCGCCCTTCTTTCCTTTCAGTTCTGCTAGACTTTT
                      ____________________________________________________________
consensus             GGACTGTGGCCCATTGCCTTCAATGCCGCCCTTCTTTCCTTTCAGTTCTGCTAGACTTTT
 
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JMFN012D09+           TGGCCCGGCAAAATTTACATTAGTCTCACTTAACATATCCCCTCTTAATGGTGGGCCTCT
JMFS045A08+           TGGCCCGGCAAAATTTACATTAGTCTCACTTAACATATCCCCTCTTAATGGTGGGCCTCT
                      ____________________________________________________________
consensus             TGGCCCGGCAAAATTTACATTAGTCTCACTTAACATATCCCCTCTTAATGGTGGGCCTCT
 
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JMFN012D09+           GATATTTCTCCCAACATAATTAAGATCCTCTGGCACTCTTCCCTTAATTCTGTCTTGAAG
JMFS045A08+           GATATTTCTCCCAACATAATTAAGATCCTCTGGCACTCTTCCCTTAATTCTGTCTTGAAG
                      ____________________________________________________________
consensus             GATATTTCTCCCAACATAATTAAGATCCTCTGGCACTCTTCCCTTAATTCTGTCTTGAAG
 
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JMFN012D09+           CCTTCCCTGGTGAGATGGAACTTGTGGCCTTCCGT                         
JMFS045A08+           CCTTCCCTGGTGAGATGGAACTTGTGGCCTTCCGTGAGAGAATCTGCCACGGTCTCTGCC
                      ____________________________________________________________
consensus             CCTTCCCTGGTGAGATGGAACTTGTGGCCTTCCGTGAGAGAATCTGCCACGGTCTCTGCC
 
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JMFS045A08+           CCTGTCCATTTCTCTATCTGAGCGAATCTCAGCAACATCAGTTGGTGAAGATGATCNGCC
                      ____________________________________________________________
consensus             CCTGTCCATTTCTCTATCTGAGCGAATCTCAGCAACATCAGTTGGTGAAGATGATCNGCC
 
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JMFS045A08+           AGGAATCTTTATCCGTCCCCGAAGGCGATTGCTAAGGGAACTCTCATGTAAGATAGATTG
                      ____________________________________________________________
consensus             AGGAATCTTTATCCGTCCCCGAAGGCGATTGCTAAGGGAACTCTCATGTAAGATAGATTG