Contig 010444:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN019F12Sequence584010444 (7)ref|XP_004230269.1|362PREDICTED: topless-related protein 3 isoform X3 [Solanum lycopersicum]
JMFN025J07Sequence590010444 (7)ref|XP_004230269.1|372PREDICTED: topless-related protein 3 isoform X3 [Solanum lycopersicum]
JMFS044H09Sequence630010444 (7)ref|XP_004230269.1|397PREDICTED: topless-related protein 3 isoform X3 [Solanum lycopersicum]
JMFS076B02Sequence618010444 (7)ref|XP_006344709.1|3e-87PREDICTED: topless-related protein 3-like isoform X3 [Solanum tuberosum]
JMSF014J12Sequence463011851 (25)ref|XP_011092107.1|5e-42PREDICTED: topless-related protein 3-like [Sesamum indicum]745010444 (7)ref|XP_004230269.1|359PREDICTED: topless-related protein 3 isoform X3 [Solanum lycopersicum]
JMSF036H22Sequence749010444 (7)ref|XP_004230269.1|359PREDICTED: topless-related protein 3 isoform X3 [Solanum lycopersicum]
JMSF038P22Sequence679011851 (25)ref|XP_006344709.1|2e-91PREDICTED: topless-related protein 3-like isoform X3 [Solanum tuberosum]784010444 (7)ref|XP_004230269.1|380PREDICTED: topless-related protein 3 isoform X3 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF036H22-                                              ACATTAAATAACCTTTCTAAGACA
rJMSF014J12-                                              ACATTAAATAACCTTTCTAAGACA
JMFS076B02+                                                                 AAGACA
rJMSF038P22-                                       TCACACAACATTAAATAACCTTTCTAAGACA
                      ____________________________________________________________
consensus                                          TCACACAACATTAAATAACCTTTCTAAGACA
 
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rJMSF036H22-          TATTTCCAATCTTAGCTTTTATCCTTGACAAAATTAAACAACAAAACCTAAAATCTATTC
rJMSF014J12-          TATTTCCAATCTTAGCTTTTATCCTTGACAAAATTAAACAACAAAACCTAAAATCTATTC
JMFS076B02+           TATTTCCAATCTTAGCTTTTATCCTTGACAAAATTAAACAACAAAACCTAAAATCTATTC
rJMSF038P22-          TATTTCCAATCTTAGCTTTTATCCTTGACAAAATTAAACAACAAAACCTAAAATCTATTC
                      ____________________________________________________________
consensus             TATTTCCAATCTTAGCTTTTATCCTTGACAAAATTAAACAACAAAACCTAAAATCTATTC
 
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rJMSF036H22-          CTCCTATAAAATACAGAGTAACACTGTCTGTCACTGTCAAAATACAATGTAATGTACTTT
rJMSF014J12-          CTCCTATAAAATACAGAGTAACACTGTCTGTCACTGTCAAAATACAATGTAATGTACTTT
JMFS076B02+           CTCCTATAAAATACAGAGTAACACTGTCTGTCACTGTCAAAATACAATGTAATGTACTTT
rJMSF038P22-          CTCCTATAAAATACAGAGTAACACTGTCTGTCACTGTCAAAATACAATGTAATGTACTTT
                      ____________________________________________________________
consensus             CTCCTATAAAATACAGAGTAACACTGTCTGTCACTGTCAAAATACAATGTAATGTACTTT
 
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rJMSF036H22-          CATTTCATTTCATCTTTGAACTTGTTCGGATACATGGTTGCTAGCTGCTGAGGATGAGGT
rJMSF014J12-          CATTTCATTTCATCTTTGAACTTGTTCGGATACATGGTTGCTAGCTGCTGAGGATGAGGT
JMFS076B02+           CATTTCATTTCATCTTTGAACTTGTTCGGATACATGGTTGCTAGCTGCTGAGGATGAGGT
rJMSF038P22-          CATTTCATTTCATCTTTGAACTTGTTCGGATACATGGTTGCTAGCTGCTGAGGATGAGGT
JMFN019F12+                                                                ATGAGGT
                      ____________________________________________________________
consensus             CATTTCATTTCATCTTTGAACTTGTTCGGATACATGGTTGCTAGCTGCTGAGGATGAGGT
 
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rJMSF036H22-          TGCCCTGCCATTTAGCATCCCATTATCAAGAGGCGGAGATACTCCCCACTTCCCGCCTTC
rJMSF014J12-          TGCCCTGCCATTTAGCATCCCATTATCAAGAGGCGGAGATACTCCCCACTTCCCGCCTTC
JMFS076B02+           TGCCCTGCCATTTAGCATCCCATTATCAAGAGGCGGAGATACTCCCCACTTCCCGCCTTC
rJMSF038P22-          TGCCCTGCCATTTAGCATCCCATTATCAAGAGGCGGAGATACTCCCCACTTCCCGCCTTC
JMFN019F12+           TGCCCTGCCATTTAGCATCCCATTATCAAGAGGCGGAGATACTCCCCACTTCCCGCCTTC
JMFN025J07+                                                           CTTCCCGCCTTC
JMFS044H09+                                         AGGCGGAGATACTCNCCACTTCCCGCCTTC
                      ____________________________________________________________
consensus             TGCCCTGCCATTTAGCATCCCATTATCAAGAGGCGGAGATACTCCCCACTTCCCGCCTTC
 
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rJMSF036H22-          AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
rJMSF014J12-          AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
JMFS076B02+           AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
rJMSF038P22-          AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
JMFN019F12+           AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
JMFN025J07+           AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
JMFS044H09+           AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
                      ____________________________________________________________
consensus             AGATTCCAATGGTTCTATCACTTTAACAGAACCATCCGTCAACCCCACCGCAAACTGGTG
 
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rJMSF036H22-          TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
rJMSF014J12-          TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
JMFS076B02+           TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
rJMSF038P22-          TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
JMFN019F12+           TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
JMFN025J07+           TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
JMFS044H09+           TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
                      ____________________________________________________________
consensus             TGTTTCCTGTGGGTGCGCTGCAATCACCACTGGATATACCGCTTGGCTTCCGTTCAATAC
 
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rJMSF036H22-          TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
rJMSF014J12-          TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
JMFS076B02+           TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
rJMSF038P22-          TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
JMFN019F12+           TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
JMFN025J07+           TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
JMFS044H09+           TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
                      ____________________________________________________________
consensus             TGTTTGAGATAGGTAAGCAGATGGAGCAATGCGGCATCTCAGCCTTAGGCTATCGGCATC
 
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rJMSF036H22-          AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
rJMSF014J12-          AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
JMFS076B02+           AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
rJMSF038P22-          AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
JMFN019F12+           AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
JMFN025J07+           AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
JMFS044H09+           AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
                      ____________________________________________________________
consensus             AAGCACTCCAATATTACCGTCGTTAAACGATGCGTAAACTAGTTGGCTATTGCATGAGTA
 
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rJMSF036H22-          TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
rJMSF014J12-          TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
JMFS076B02+           TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
rJMSF038P22-          TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
JMFN019F12+           TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
JMFN025J07+           TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
JMFS044H09+           TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
                      ____________________________________________________________
consensus             TGTAGCATATGAGATAGGTGCAGATAGGGCATCTTGTGGGATCCACTGGCGTATGCGTTC
 
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rJMSF036H22-          CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
rJMSF014J12-          CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
JMFS076B02+           CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
rJMSF038P22-          CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
JMFN019F12+           CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
JMFN025J07+           CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
JMFS044H09+           CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
                      ____________________________________________________________
consensus             CATCTTGGAGGCATCATATATTGCCAACTGAGTTTCATGAGCTACCAGCAAGCGCACTTG
 
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rJMSF036H22-          GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
rJMSF014J12-          GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
JMFS076B02+           GTCAGCATGGAA                                                
rJMSF038P22-          GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
JMFN019F12+           GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
JMFN025J07+           GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
JMFS044H09+           GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
                      ____________________________________________________________
consensus             GTCAGCATGGAACTGCACTCGTGTGTCACCGGTGGGCGCTTTACCAGCAGGCAATTGGAT
 
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rJMSF036H22-          AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
rJMSF014J12-          AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
rJMSF038P22-          AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
JMFN019F12+           AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
JMFN025J07+           AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
JMFS044H09+           AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
                      ____________________________________________________________
consensus             AGGAACTGCTTTTCTTTTTTCCCATGTATCAATGCTCCATAAACAAAGCTGGGCATCAGC
 
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rJMSF036H22-          A                                                           
rJMSF014J12-          A                                                           
rJMSF038P22-          ACCAGATGAAACCAGTATGTTAAGGTTAGTAGA                           
JMFN019F12+           ACCAGATGAAACCAGTATGTTAAGGTTAGTAGA                           
JMFN025J07+           ACCAGATGAAACCAGTATGTTAAGGTTAGTAGAGAAAGCAAGACCAGTTATGCGCTTCTG
JMFS044H09+           ACCAGATGAAACCAGTATGTTAAGGTTAGTAGAGAAAGCAAGACCAGTTATGCGCTTCTG
                      ____________________________________________________________
consensus             ACCAGATGAAACCAGTATGTTAAGGTTAGTAGAGAAAGCAAGACCAGTTATGCGCTTCTG
 
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JMFN025J07+           ATGGCCCTTAAGTTTGGATTTCACCTCATCTACCCTAA                      
JMFS044H09+           ATGGCCCTTAAGTTTGGATTTCACCTCATCTACCCTAACATTGTATATATGTATGGTCGA
                      ____________________________________________________________
consensus             ATGGCCCTTAAGTTTGGATTTCACCTCATCTACCCTAACATTGTATATATGTATGGTCGA