| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS043B03 | Sequence | 627 | 010441 (5) | ||||||||
| JMSF021M17 | Sequence | 621 | 010441 (5) | dbj|BAI47572.1| | 3e-19 | phytoene synthase [Ipomoea sp. Kenyan] | 776 | 011319 (5) | dbj|BAI47572.1| | 5e-136 | phytoene synthase [Ipomoea sp. Kenyan] |
| JMSF024J21 | Sequence | 645 | 010441 (5) | dbj|BAI47572.1| | 9e-45 | phytoene synthase [Ipomoea sp. Kenyan] | 791 | 011319 (5) | dbj|BAI47572.1| | 1e-162 | phytoene synthase [Ipomoea sp. Kenyan] |
| JMSF038P07 | Sequence | 621 | 010441 (5) | dbj|BAI47572.1| | 2e-23 | phytoene synthase [Ipomoea sp. Kenyan] | 907 | 011319 (5) | dbj|BAI47572.1| | 3e-170 | phytoene synthase [Ipomoea sp. Kenyan] |
| JMSF051G16 | Sequence | 592 | 010441 (5) | dbj|BAI47572.1| | 2e-14 | phytoene synthase [Ipomoea sp. Kenyan] | |||||
This contig is upended
. : . : . : . : . : . :
JMSF024J21+ TCCTG
____________________________________________________________
consensus TCCTG
. : . : . : . : . : . :
JMSF024J21+ TTCACCAAAGCAGCCTGCTTCAACACTACATCGTAGACCTTTTGCTCGGATGACATCACC
____________________________________________________________
consensus TTCACCAAAGCAGCCTGCTTCAACACTACATCGTAGACCTTTTGCTCGGATGACATCACC
. : . : . : . : . : . :
JMSF038P07+ TTC
JMSF024J21+ ATTTCCCCGGCTGGACTAACCACCGCATTCGAAAGCACGGGGAATTTCCCTCCATTCTTC
____________________________________________________________
consensus ATTTCCCCGGCTGGACTAACCACCGCATTCGAAAGCACGGGGAATTTCCCTCCATTCTTC
. : . : . : . : . : . :
JMSF038P07+ GAGCCCGACCCTCCCGAACAAAGATATCTCGAGTCTGCATTGAAAGACGCCAAAGTGCAT
JMSF024J21+ GAGCCCGACCCTCCCGAACAAAGATATCTCGAGTCTGCATTGAAAGACGCCAAAGTGCAT
____________________________________________________________
consensus GAGCCCGACCCTCCCGAACAAAGATATCTCGAGTCTGCATTGAAAGACGCCAAAGTGCAT
. : . : . : . : . : . :
JMSF038P07+ CCTTGCTTCTTACCCTTCTTAGCCCTGCCTTTGCCCACCAAACTCGTGTTCCTGCCAAGG
JMSF021M17+ TTCTTAGCCCTGCCTTTGCCCACCAAACTCGTGTTCCTGCCAAGG
JMSF051G16+ TTTGCCCACCAAACTCGTGTTCCTGCCAAGG
JMSF024J21+ CCTTGCTTCTTACCCTTCTTAGCCCTGCCTTTGCCCACCAAACTCGTGTTCCTGCCAAGG
____________________________________________________________
consensus CCTTGCTTCTTACCCTTCTTAGCCCTGCCTTTGCCCACCAAACTCGTGTTCCTGCCAAGG
. : . : . : . : . : . :
JMSF038P07+ AACCTCGATGAATCCACGACCCGGATTCCCTCCCTCACCGAATAAAAGATTCCAGTGCCA
JMSF021M17+ AACCTCGATGAATCCACGACCCGGATTCCCTCCCTCACCGAATAAAAGATTCCAGTGCCA
JMSF051G16+ AACCTCGATGAATNCACGACCCGGATTCCCTCCCTCACCGAATAAAAGATTCCAGTGCCA
JMSF024J21+ AACCTCGATGAATCCACGACCCGGATTCCCTCCCTCACCGAATAAAAGATTCCAGTGCCA
____________________________________________________________
consensus AACCTCGATGAATCCACGACCCGGATTCCCTCCCTCACCGAATAAAAGATTCCAGTGCCA
. : . : . : . : . : . :
JMSF038P07+ TTTGATAGCTCAGAAGAGGGAGAAACAACCCACAGCAAGGCACTAGACATACTTGAGGTG
JMSF021M17+ TTTGATAGCTCAGAAGAGGGAGAAACAACCCACAGCAAGGCACTAGACATACTTGAGGTG
JMSF051G16+ TNTGATAGCTCNGAAGAGGGAGAAACAACCCACAGCAAGGCACTAGACATACTTGAGGTG
JMSF024J21+ TTTGATAGCTCAGAAGAGGGAGAAACAACCCACAGCAAGGCACTAGACATACTTGAGGTG
JMFS043B03+ AGCAAGGCACTAGACATACTTGAGGTG
____________________________________________________________
consensus TTTGATAGCTCAGAAGAGGGAGAAACAACCCACAGCAAGGCACTAGACATACTTGAGGTG
. : . : . : . : . : . :
JMSF038P07+ AAATAGTTTGTATATAACTACTTCCAAGATTTTGTATTTATGTTCCCTTGATTATCCTGG
JMSF021M17+ AAATAGTTTGTATATAACTACTTCCAAGATTTTGTATTTATGTTCCCTTGATTATCCTGG
JMSF051G16+ AAATAGTTTGTATATAACTACTTCCAAGATTTNGTATTTATGTTCCCTTGATTATCCTGG
JMSF024J21+ AAATAGTTTGTATATAACTACTTCCAAGATTTTGTATTTATGTTCCCTTGATTATCCTGG
JMFS043B03+ AAATAGTTTGTATATAACTACTTCCAAGATTTTGTATTTATGTTCCCTTGATTATCCTGG
____________________________________________________________
consensus AAATAGTTTGTATATAACTACTTCCAAGATTTTGTATTTATGTTCCCTTGATTATCCTGG
. : . : . : . : . : . :
JMSF038P07+ TGTGTAGTTTATAGTAAAAAATGGAATATGCCCACTAAAGTCTTTCCACTTTCAAACAAT
JMSF021M17+ TGTGTAGTTTATAGTAAAAAATGGAATATGCCCACTAAAGTCTTTCCACTTTCAAACAAT
JMSF051G16+ TGNGTAGTTTATAGTAAAAAATGGAATATGCCCACTAAAGTCTTTCCACTTTCAAACAAT
JMSF024J21+ TGTGTAGTTTATAGTAAAAAATGGAATATGCCCACTAAAGTCTTTCCACTTTCAAACAAT
JMFS043B03+ TGTGTAGTTTATAGTAAAAAATGGAATATGCCCACTAAAGTCTTTCCACTTTCAAACAAT
____________________________________________________________
consensus TGTGTAGTTTATAGTAAAAAATGGAATATGCCCACTAAAGTCTTTCCACTTTCAAACAAT
. : . : . : . : . : . :
JMSF038P07+ GCCCACCTTGGCTTTTTGCAAAAGAGATCATTAAACCCCCCCACAACCAAATCAAACCGA
JMSF021M17+ GCCCACCTTGGCTTTTTGCAAAAGAGATCATTAAACCCCCCCACAACCAAATCAAACCGA
JMSF051G16+ GCCCACCTTGGCTTTTTGCAAAAGAGATCATTAAACCCCCCCACAACCAAATCAAACCGA
JMSF024J21+ GCCCACCTTGGCTTTTTGCAAAAGAGATCATTAAACCCCCCCACAACCAAATCAAACCGA
JMFS043B03+ GCCCACCTTGGCTTTTTGCAAAAGAGATCATTAAACCCCACCACAACCAAATCAAACCGA
____________________________________________________________
consensus GCCCACCTTGGCTTTTTGCAAAAGAGATCATTAAACCCCCCCACAACCAAATCAAACCGA
. : . : . : . : . : . :
JMSF038P07+ CTTTGCTTTAACTGCCACAAAAAAGCAAAGGGTTTATGAATTATGAACACCAAGCTCCCC
JMSF021M17+ CTTTGCTTTAACTGCCACAAAAAAGCAAAGGGTTTATGAATTATGAACACCAAGCTCCCC
JMSF051G16+ CTTTGCTTTAACTGCCACAAAAAAGCAAAGGGTTTATGAATTATGAACACCAAGCTCCCC
JMSF024J21+ CTTTGCTTTAACTGCCACAAAAAAGCAAAGGGTTTATGAATTATGAACACCAAGCTCCCC
JMFS043B03+ CTTTGCTTTAACTGCCACAAAAAAGCAAAGGGTTTATGAATTATGAACACCAAGCTCCCC
____________________________________________________________
consensus CTTTGCTTTAACTGCCACAAAAAAGCAAAGGGTTTATGAATTATGAACACCAAGCTCCCC
. : . : . : . : . : . :
JMSF038P07+ TCTTATCTCCTTCTGC
JMSF021M17+ TCTTATCTCCTTCTGC
JMSF051G16+ TCTTATCTCCTTCTGC
JMSF024J21+ TCTTATCTCCTTCTGCTTCTTTGCTCCAGAGAAAGCAAT
JMFS043B03+ TCTTATCTCCTTCTGCACAATGAAATGAACCACAAATCAAACTAAATAACCTGCTGGGCA
____________________________________________________________
consensus TCTTATCTCCTTCTGCTTCTTTGCTTGAGCGACAGCTCTAACTAAATAACCTGCTGGGCA
. : . : . : . : . : . :
JMFS043B03+ TACTGAATTATAGCACCATATGTCCTTTAACAAAAAAAAAAGATCAAAAAAGTCTTAAAT
____________________________________________________________
consensus TACTGAATTATAGCACCATATGTCCTTTAACAAAAAAAAAAGATCAAAAAAGTCTTAAAT
. : . : . : . : . : . :
JMFS043B03+ CAACAACAACAGCACCTTCCCTACAGTGCTGCACAAAGAAAGGATCTTTAATATTGAGAA
____________________________________________________________
consensus CAACAACAACAGCACCTTCCCTACAGTGCTGCACAAAGAAAGGATCTTTAATATTGAGAA
. : . : . : . : . : . :
JMFS043B03+ AAAAAAGGAAACCAATAAAATAATCTGCAAGATTATGCACCAGACATCACTTTCTTATGG
____________________________________________________________
consensus AAAAAAGGAAACCAATAAAATAATCTGCAAGATTATGCACCAGACATCACTTTCTTATGG
. : . : . : . : . : . :
JMFS043B03+ TTATTGGGGATTTCTATATTTAGTTAAATGGAATATAATATGCAACACTTCTTGTCTTCC
____________________________________________________________
consensus TTATTGGGGATTTCTATATTTAGTTAAATGGAATATAATATGCAACACTTCTTGTCTTCC
. : . : . : . : . : . :
JMFS043B03+ TTACACGTACGAGCTATCTTGAATGGACCAACCTTTCATATCTATTGTTGCACTATGAAG
____________________________________________________________
consensus TTACACGTACGAGCTATCTTGAATGGACCAACCTTTCATATCTATTGTTGCACTATGAAG