Contig 010440:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015F11Sequence592010440 (2)ref|XP_002309001.2|4e-92hypothetical protein POPTR_0006s07240g [Populus trichocarpa] gb|EEE92524.2| hypo
JMFS041E08Sequence629010440 (2)ref|XP_006366962.1|2e-100PREDICTED: calcium-transporting ATPase 8, plasma membrane-type-like isoform X1

Alignment

This contig is upended


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JMCP015F11+                                                             CTCTTACACC
                      ____________________________________________________________
consensus                                                               CTCTTACACC
 
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JMCP015F11+           AGGaCGGCATGGATCCTTAATCCCAAGAATAGCAAGTAAAATCAAGTCTCCCTCTGGCAA
                      ____________________________________________________________
consensus             AGGTCGGCATGGATCCTTAATCCCAAGAATAGCAAGTAAAATCAAGTCTCCCTCTGGCAA
 
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JMCP015F11+           TTCCCATCGACTCAATTCTTCTTCACTTTTAGGAATTTTATCCATGTCATATGACACATA
                      ____________________________________________________________
consensus             TTCCCATCGACTCAATTCTTCTTCACTTTTAGGAATTTTATCCATGTCATATGACACATA
 
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JMCP015F11+           GGCAACAGCCACACAACGCAAACTCTCAGTAGCCATGTCTTCAATTGCCTTTTTGAAGGA
                      ____________________________________________________________
consensus             GGCAACAGCCACACAACGCAAACTCTCAGTAGCCATGTCTTCAATTGCCTTTTTGAAGGA
 
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JMCP015F11+           TATTGCCTCATTTTCATCCAGAGGCACCACATTATCATTTGCATCAATGTAGTGTGTACA
                      ____________________________________________________________
consensus             TATTGCCTCATTTTCATCCAGAGGCACCACATTATCATTTGCATCAATGTAGTGTGTACA
 
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JMCP015F11+           GCAAGATAGGACAATCTCAGCAGCACCTTTCCAATGTATATGAACTTCAGAATCCAGTTT
JMFS041E08+                                                         TCAGAATCCAGTTT
                      ____________________________________________________________
consensus             GCAAGATAGGACAATCTCAGCAGCACCTTTCCAATGTATATGAACTTCAGAATCCAGTTT
 
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JMCP015F11+           CACAGCAACACCACCTCGCTTCTTCTCTGAGTTGAATGGGAAGGCATGGATAATTGACGA
JMFS041E08+           CACAGCAACACCACCTCGCTTCTTCTCTGAGTTGAATGGGAAGGCATGGATAATTGACGA
                      ____________________________________________________________
consensus             CACAGCAACACCACCTCGCTTCTTCTCTGAGTTGAATGGGAAGGCATGGATAATTGACGA
 
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JMCP015F11+           CTCAGATCGAATGGCATCAAAATTCAAACCAAGCTTGACTCCAAACTGGAGAATGGCCTT
JMFS041E08+           CTCAGATCGAATGGCATCAAAATTCAAACCAAGCTTGACTCCAAACTGGAGAATGGCCTT
                      ____________________________________________________________
consensus             CTCAGATCGAATGGCATCAAAATTCAAACCAAGCTTGACTCCAAACTGGAGAATGGCCTT
 
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JMCP015F11+           CTCTGTTGGTGATCCAGAAACCTCGGGTACTCCACCCTCTGGAACAAACACACTGCCAGT
JMFS041E08+           CTCTGTTGGTGATCCAGAAACCTCGGGTACTCCACCCTCTGGAACAAACACACTGCCAGT
                      ____________________________________________________________
consensus             CTCTGTTGGTGATCCAGAAACCTCGGGTACTCCACCCTCTGGAACAAACACACTGCCAGT
 
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JMCP015F11+           TGTATTCTGTGCAATGCCTTCAAGGAGTAGAGGTATGACCTTCTGAGGCAATTGTGATTT
JMFS041E08+           TGTATTCTGTGCAATGCCTTCAAGGAGTAGAGGTATGACCTTCTGAGGCAATTGTGATTT
                      ____________________________________________________________
consensus             TGTATTCTGTGCAATGCCTTCAAGGAGTAGAGGTATGACCTTCTGAGGCAATTGTGATTT
 
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JMCP015F11+           ATCATCTGGAGGATTGATTCGTTTTCCACCAATATATGCATC                  
JMFS041E08+           ATCATCTGGAGGATTGATTCGTTTTCCACCAATATATGCATCAACAACAGTCATCTGATT
                      ____________________________________________________________
consensus             ATCATCTGGAGGATTGATTCGTTTTCCACCAATATATGCATCAACAACAGTCATCTGATT
 
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JMFS041E08+           CAGAGTCAGTGTTCCAGTTTTGTCACTGCAAATGGTGGTTGCAGAGCCCATAGTTTCACA
                      ____________________________________________________________
consensus             CAGAGTCAGTGTTCCAGTTTTGTCACTGCAAATGGTGGTTGCAGAGCCCATAGTTTCACA
 
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JMFS041E08+           GGCAGAGAGTCTCCTAACCAAAGCCTTATCTGCCATCATTTTCCTCATTGAATATGCAAG
                      ____________________________________________________________
consensus             GGCAGAGAGTCTCCTAACCAAAGCCTTATCTGCCATCATTTTCCTCATTGAATATGCAAG
 
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JMFS041E08+           CGTAAGAGTGACAGCTAAAGGAAGTCCTTCGGGTACTGCCACAACCACAATGGTAACTGC
                      ____________________________________________________________
consensus             CGTAAGAGTGACAGCTAAAGGAAGTCCTTCGGGTACTGCCACAACCACAATGGTAACTGC
 
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JMFS041E08+           TATAGTGAAGATTTTAATAGCCCCATCTATAGCATCGCCAACTTTAGTCTTCCCAGCTTT
                      ____________________________________________________________
consensus             TATAGTGAAGATTTTAATAGCCCCATCTATAGCATCGCCAACTTTAGTCTTCCCAGCTTT
 
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JMFS041E08+           AAAATGGGGATCCTTGGTGTGCCCAGTGAAGAATCTGATCATAAGGACAAGCAGAACAAC
                      ____________________________________________________________
consensus             AAAATGGGGATCCTTGGTGTGCCCAGTGAAGAATCTGATCATAAGGACAAGCAGAACAAC