Contig 010438:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS036E04Sequence615010438 (3)ref|XP_009761470.1|1e-109PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFS039D02Sequence646010438 (3)ref|XP_009761470.1|2e-120PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]
JMFS045E12Sequence555010438 (3)ref|XP_009761470.1|4e-100PREDICTED: ubiquitin carboxyl-terminal hydrolase 17-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS045E12+                                           ATTGGTGACTTGTCGCTCGTTCCACTCA
JMFS039D02+                         ACTCCATAGAGCTGGTAAATTGGTGACTTGTCGCTCGTTCCACTCA
JMFS036E04+                                                        CGCTCGTTCCACTCA
                      ____________________________________________________________
consensus                           ACTCCATAGAGCTGGTAAATTGGTGACTTGTCGCTCGTTCCACTCA
 
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JMFS045E12+           TGTATGGGGCCAAATTCAGAATTTCAGGAAATGTTACCGGCTTATTCAGCTTGCCAAATT
JMFS039D02+           TGTATGGGGCCAAATTCAGAATTTCAGGAAATGTTACCGGCTTATTCAGCTTGCCAAATT
JMFS036E04+           TGTATGGGGCCAATTTCAGAATTTCAGGAAATGTAACCGGCCTATTCAGCTTGCCAAATT
                      ____________________________________________________________
consensus             TGTATGGGGCCAAATTCAGAATTTCAGGAAATGTTACCGGCTTATTCAGCTTGCCAAATT
 
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JMFS045E12+           TACCTGACTGATATCTCTTCAAGGTAATAGTAAGGACATTAGGGGCCTCCAGCACTTTCA
JMFS039D02+           TACCTGACTGATATCTCTTCAAGGTAATAGTAAGGACATTAGGGGCCTCCAGCACTTTCA
JMFS036E04+           TACCTGACTGATATCTCTTCAAGGTAATAGTAAGGACATTAGGGGCCTCCAGCACTTTCA
                      ____________________________________________________________
consensus             TACCTGACTGATATCTCTTCAAGGTAATAGTAAGGACATTAGGGGCCTCCAGCACTTTCA
 
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JMFS045E12+           TCTTCTTTCTAGCCTTTTCATAGGATTTGCATCTGCTGCAGTGGTACTTGTTTTCACCAT
JMFS039D02+           TCTTCTTTCTAGCCTTTTCATAGGATTTGCATCTGCTGCAGTGGTACTTGTTTTCACCAT
JMFS036E04+           TCTTCTTTCTAGCCTTTTCATAGGATTTGCATCTGCTGCAGAGTTACTTGTTTTCACCAT
                      ____________________________________________________________
consensus             TCTTCTTTCTAGCCTTTTCATAGGATTTGCATCTGCTGCAGTGGTACTTGTTTTCACCAT
 
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JMFS045E12+           CTAACACCTCAGTGCGTGAGAATTGTTTTAGAGCCTCTTCCAGAGTTACAACATCTCCAT
JMFS039D02+           CTAACACCTCAGTGCGTGAGAATTGTTTTAGAGCCTCTTCCAGAGTTACAACATCTCCAT
JMFS036E04+           CTAACACCTCAGTGCGTGAGAATTGTTTTAGAGCCTCTTCCAGAGTTACAACATCTCCAT
                      ____________________________________________________________
consensus             CTAACACCTCAGTGCGTGAGAATTGTTTTAGAGCCTCTTCCAGAGTTACAACATCTCCAT
 
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JMFS045E12+           ATATCTCAACTATAAGGTCCATCATTTTTTCATGCTTCTCAGATTTGCCTCCACACCTCA
JMFS039D02+           ATATCTCAACTATAAGGTCCATCATTCTTTCATGCTTCTCAGATTTGCCTCCACACCTCA
JMFS036E04+           ATATCTCAACTATAAGGTCCATCATTCTTTCATGCTTCTCAGATTTGCCTCCACACCTCA
                      ____________________________________________________________
consensus             ATATCTCAACTATAAGGTCCATCATTCTTTCATGCTTCTCAGATTTGCCTCCACACCTCA
 
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JMFS045E12+           TGCACTCAATCTTTGAGCGGAGACAGCCTCCAAATGTAAGCCCAATTAGAGTTGTTTCCT
JMFS039D02+           TGCACTCAATCTTTGAGCGGAGACAGCCTCCAAATGTAAGCCCAATTAGAGTTGTTTCCT
JMFS036E04+           TGCACTCAATCTTTGAGCGGAGACAGCCTCCAAATGTAAGCCCAATTAGAGTTGTTTCCT
                      ____________________________________________________________
consensus             TGCACTCAATCTTTGAGCGGAGACAGCCTCCAAATGTAAGCCCAATTAGAGTTGTTTCCT
 
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JMFS045E12+           CTTCCAAAGATCCTGATACAGTGACTCCTACTTCCTTCAAGCAAACAGATTGCATGGTGT
JMFS039D02+           CTTCCAAAGATCCTGATACAGTGACTCCTACTTCCTTCAAGCAAACAGATTGCATGGTGT
JMFS036E04+           CTTCCAAAGATCCTGATACAGTGACTCCTACTTCCTTCAAGCAAACAGATTGCATGGTGT
                      ____________________________________________________________
consensus             CTTCCAAAGATCCTGATACAGTGACTCCTACTTCCTTCAAGCAAACAGATTGCATGGTGT
 
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JMFS045E12+           CAATGACATACCTGAGAAACTCATGAGCATCTTCTTCTTGCCCATTACCAAGATTGCTCC
JMFS039D02+           CAATGACATACCTGAGAAACTCATGAGCATCTTCTTCTTGCCCATTACCAAGATTGCTCC
JMFS036E04+           CAATGACATACCTGAGAAACTCATGAGCATCTTCTTCTTGCCCATTACCAAGATTGCTCC
                      ____________________________________________________________
consensus             CAATGACATACCTGAGAAACTCATGAGCATCTTCTTCTTGCCCATTACCAAGATTGCTCC
 
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JMFS045E12+           CAATGTTCTCCAAATGGGAAACTATTCGGATTGGGGAGAGTGGAGAA             
JMFS039D02+           CAATGTTCTCCAAATGGGAAACTATTCGGATTGGGGAGAGTGGAGAATTTCCCTCCTTTG
JMFS036E04+           CAATGTTCTCCAAATGGGAAACTATTCGGATTGGGGAGAGTGGAGAATTTCCCTCCTTTG
                      ____________________________________________________________
consensus             CAATGTTCTCCAAATGGGAAACTATTCGGATTGGGGAGAGTGGAGAATTTCCCTCCTTTG
 
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JMFS039D02+           CTTTTAGAACTAAACTCTCTAATTCACAGGTGAAGCACCATCCTTCCTTCCTGCATCCTT
JMFS036E04+           CTTTTAGAACTAAACTCTCTAATTCACAGGTGAAGCACCATCCTTCCTTCCTGCATCCTT
                      ____________________________________________________________
consensus             CTTTTAGAACTAAACTCTCTAATTCACAGGTGAAGCACCATCCTTCCTTCCTGCATCCTT