Contig 010430:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS030B07Sequence596010430 (3)ref|XP_004242271.1|5e-04PREDICTED: protein CHUP1, chloroplastic-like isoform X1 [Solanum lycopersicum]
JMFS097G07Sequence626010430 (3)ref|XP_004242271.1|2e-06PREDICTED: protein CHUP1, chloroplastic-like isoform X1 [Solanum lycopersicum]
JMFS099A04Sequence626010430 (3)ref|XP_009790396.1|3e-30PREDICTED: protein CHUP1, chloroplastic-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS099A04+               CGGTTTTGAAGCTCCATCACAACAGTTTCTTGCTCCTTAAGTCCATAATACTCGAG
                      ____________________________________________________________
consensus                 CGGTTTTGAAGCTCCATCACAACAGTTTCTTGCTCCTTAAGTCCATAATACTCGAG
 
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JMFS099A04+           CAGTTTGATCTCGAGGTTCCTCTCCCTTTCCTTGAGAGATTTAATGTTGTCTTTTAAGCT
                      ____________________________________________________________
consensus             CAGTTTGATCTCGAGGTTCCTCTCCCTTTCCTTGAGAGATTTAATGTTGTCTTTTAAGCT
 
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JMFS099A04+           CCTGATTTCTTTCTCGCGTTCACTCCTTTCAACATCTTTCCCCGGAGAAAAACCAGGTTT
                      ____________________________________________________________
consensus             CCTGATTTCTTTCTCGCGTTCACTCCTTTCAACATCTTTCCCCGGAGAAAAACCAGGTTT
 
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JMFS099A04+           CGATGTAGCTAAAGTAAACTCCCTCACAAGATCATTGAACTCCGGCAAGAGGAGCCCATC
                      ____________________________________________________________
consensus             CGATGTAGCTAAAGTAAACTCCCTCACAAGATCATTGAACTCCGGCAAGAGGAGCCCATC
 
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JMFS099A04+           ATCCTTTCCTTCAGATCTACCGCTAGTTGATGGACAACATACATCCACAACACCTTCACT
                      ____________________________________________________________
consensus             ATCCTTTCCTTCAGATCTACCGCTAGTTGATGGACAACATACATCCACAACACCTTCACT
 
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JMFS099A04+           TACAGATTGATCTTCTTGTTTCTCCGGTGCCATAGAACTAGAAGCACGAGCCCGGGGTGT
                      ____________________________________________________________
consensus             TACAGATTGATCTTCTTGTTTCTCCGGTGCCATAGAACTAGAAGCACGAGCCCGGGGTGT
 
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JMFS099A04+           ACTATGCAAGATTTGTATCTCCGGTGCCATAGAGGCAGAAGCACGACCCCGGGGTGTAGT
JMFS097G07+             TATGCAAGATTTGTATCTCCGGTGCCATAGAGGCAGAAGCACGACCCCGGGGTGTAGT
                      ____________________________________________________________
consensus             ACTATGCAAGATTTGTATCTCCGGTGCCATAGAGGCAGAAGCACGACCCCGGGGTGTAGT
 
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JMFS099A04+           CTGCGAGGATTGCATCTCTGGTGCCATGGAACCAGAAATACGAGCACGGGGTGTATTCTG
JMFS097G07+           CTGCGAGGATTGCATCTCTGGTGCCATGGAACCAGAAATACGAGCACGGGGTGTATTCTG
JMFS030B07+               GAGGATTGCATCTCTGGTGCCATGAACCCAGAAATACGAGCACGGGGTGTATTCTG
                      ____________________________________________________________
consensus             CTGCGAGGATTGCATCTCTGGTGCCATGGAACCAGAAATACGAGCACGGGGTGTATTCTG
 
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JMFS099A04+           CAAGGGTTGTGACTCAATTGCCATAGAACTAGAACTACGAGCCCGGGGTGTATTCTGATC
JMFS097G07+           CAAGGGTTGTGACTCAATTGCCATAGAACTAGAACTACGAGCCCGGGGTGTATTCTGATC
JMFS030B07+           CAAGGGTTGTGACTCAATTGCCATAGAACTAGAACTACGAGCCCGGGGTGTATTCTGATC
                      ____________________________________________________________
consensus             CAAGGGTTGTGACTCAATTGCCATAGAACTAGAACTACGAGCCCGGGGTGTATTCTGATC
 
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JMFS099A04+           AGGGCGAGCACGGGGAGTAGTTTGTGAGGATTGATCGAGACGACAGCGGGGCGTAGCCTG
JMFS097G07+           AGGGCGAGCACGGGGAGTAGTTTGTGAGGATTGATCGAGACGACAGCGGGGCGTAGCCTG
JMFS030B07+           AGGGCGAGCACGGGGAGTAGTTTGTGAGGATTGATCGAGACGACAGCGGGGCGTAGCCTG
                      ____________________________________________________________
consensus             AGGGCGAGCACGGGGAGTAGTTTGTGAGGATTGATCGAGACGACAGCGGGGCGTAGCCTG
 
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JMFS099A04+           CAAAGAGGGATCCACATGTTCACCACCTTT                              
JMFS097G07+           CAAAGAGGGATCCACATGTTCACCACCTTTTGAGGGAGGGCGTTTGGGTGGCTTGATTCT
JMFS030B07+           CAAAGAGGGATCCACATGTTCACCACCTTTTGAGGGAGGGCGTTTGGGTGGCTTGATTCT
                      ____________________________________________________________
consensus             CAAAGAGGGATCCACATGTTCACCACCTTTTGAGGGAGGGCGTTTGGGTGGCTTGATTCT
 
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JMFS097G07+           TTTGTTTCTCAAAATGGTATAAAGAATTCCACCAAGAGACAGAGCCACAGCTACCCCAAA
JMFS030B07+           TTTGTTTCTCAAAATGGTATAAAGAATTCCACCAAGAGACAGAGCCACAGCTACCCCAAA
                      ____________________________________________________________
consensus             TTTGTTTCTCAAAATGGTATAAAGAATTCCACCAAGAGACAGAGCCACAGCTACCCCAAA
 
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JMFS097G07+           TTTTAGCAGCACAGGCCTAATATCCCTCTTTTCTCTCATATTTACTATTTATATTTGTTC
JMFS030B07+           TTTTAGCAGCACAGGCCTAATATCCCTCTTTTCTCTCATATTTACTATTTATATTTGTTC
                      ____________________________________________________________
consensus             TTTTAGCAGCACAGGCCTAATATCCCTCTTTTCTCTCATATTTACTATTTATATTTGTTC
 
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JMFS097G07+           AATCAACAGATTAATCAATCCTTAAAATTCCAGTGATTCCTTAAACTATACGCACGCCAG
JMFS030B07+           AATCAACAGATTAATCAATCCTTAAAATTCCAGTGATTCCTTAAACTATACGCACGCCAG
                      ____________________________________________________________
consensus             AATCAACAGATTAATCAATCCTTAAAATTCCAGTGATTCCTTAAACTATACGCACGCCAG
 
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JMFS097G07+           AAACAAACAGATGAATACCATATCTTCTTCCTCTTCACCTTCATC               
JMFS030B07+           AAACAAACAGATGAATACCATATCTTCTTCCTCTTCACCTTCATCGGTGAGAGACGAGAT
                      ____________________________________________________________
consensus             AAACAAACAGATGAATACCATATCTTCTTCCTCTTCACCTTCATCGGTGAGAGACGAGAT
 
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JMFS030B07+           TTTCTTCGCCCCCAGCATCGGATTTGATGGAGGGCAGGCGTGGAAACGGGCGAATAAAGA
                      ____________________________________________________________
consensus             TTTCTTCGCCCCCAGCATCGGATTTGATGGAGGGCAGGCGTGGAAACGGGCGAATAAAGA
 
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JMFS030B07+           AGGGCGTTAAGGAAACGCGATTTTCTGACAATCTGATGTGGATTGTTTGGGTTTGTTCTG
                      ____________________________________________________________
consensus             AGGGCGTTAAGGAAACGCGATTTTCTGACAATCTGATGTGGATTGTTTGGGTTTGTTCTG