Contig 010427:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS027C07Sequence640010427 (2)ref|XP_009627658.1|2e-85PREDICTED: protein transport protein Sec24-like CEF [Nicotiana tomentosiformis]
JMSF029J15Sequence656006219 (4)ref|XP_009594569.1|1e-11PREDICTED: protein transport protein Sec24-like CEF [Nicotiana tomentosiformis]736010427 (2)ref|XP_004242337.1|1e-73PREDICTED: protein transport protein Sec24-like CEF [Solanum lycopersicum]

Alignment

This contig is upended


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rJMSF029J15-                                                                 CACTC
                      ____________________________________________________________
consensus                                                                    CACTC
 
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rJMSF029J15-          TCAATGTCAAGCACTGAAGACCAATCCATTAGAGCCTCATAAATTGTTTGTACCATGCAA
                      ____________________________________________________________
consensus             TCAATGTCAAGCACTGAAGACCAATCCATTAGAGCCTCATAAATTGTTTGTACCATGCAA
 
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rJMSF029J15-          TTGATGTAAACTAAGCAATTTGTTTATACATTTCAATTTTATATTTGCCTATCAGAAAAC
                      ____________________________________________________________
consensus             TTGATGTAAACTAAGCAATTTGTTTATACATTTCAATTTTATATTTGCCTATCAGAAAAC
 
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rJMSF029J15-          AAAATCTAGTTTTACAGTCTCATGACAAAAATGTGCCGGCCTAAAACAAAAATAAAAATG
JMFS027C07+                               CATGACAAAAATGTGCGGGCCTAAAACAAAAATAAAAATG
                      ____________________________________________________________
consensus             AAAATCTAGTTTTACAGTCTCATGACAAAAATGTGCGGGCCTAAAACAAAAATAAAAATG
 
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rJMSF029J15-          ACTTTGGTCACTCATAGGTCCATCTATCCATAATTTGAATCCAACAGTGCCCCCTCACCA
JMFS027C07+           ACTTTGGTCACTCATAGGTCCATCTATCCATAATTTGAATCCAACAGTGCCCCCTCACCA
                      ____________________________________________________________
consensus             ACTTTGGTCACTCATAGGTCCATCTATCCATAATTTGAATCCAACAGTGCCCCCTCACCA
 
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rJMSF029J15-          TGGGGATCTAGACTGATTTTCAAGCCATTTTACTTTGAATTTGCCGATGAATATGTATCA
JMFS027C07+           TGGGGATCTAGACTGATTTTCAAGCCATTTTACTTTGAATTTGCCGATGAATATGTATCA
                      ____________________________________________________________
consensus             TGGGGATCTAGACTGATTTTCAAGCCATTTTACTTTGAATTTGCCGATGAATATGTATCA
 
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rJMSF029J15-          GGAACTCGACATATGAAAGTCCAGCTGGAGTCTTGTCTTCCACCATGTACGAGAAAAATA
JMFS027C07+           GGAACTCGACATATGAAAGTCCAGCTGGAGTCTTGTCTTCCACCATGTACGAGAAAAATA
                      ____________________________________________________________
consensus             GGAACTCGACATATGAAAGTCCAGCTGGAGTCTTGTCTTCCACCATGTACGAGAAAAATA
 
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rJMSF029J15-          ACATTCCTGATGAATCTCCTTTTTTGCATAATTTCAAGCGAAGGTAGTTACACCTTAGGC
JMFS027C07+           ACATTCCTGATGAATCTCCTTTTTTGCATAATTTCAAGCGAAGGTAGTTACACCTTAGGC
                      ____________________________________________________________
consensus             ACATTCCTGATGAATCTCCTTTTTTGCATAATTTCAAGCGAAGGTAGTTACACCTTAGGC
 
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rJMSF029J15-          GCCTAATGTCATTAATGATTTCATTAAGCTTCTTTGACAACGGATTGTCATGTTGTTGCA
JMFS027C07+           GCCTAATGTCATTAATGATTTCATTAAGCTTCTTTGACAACGGATTGTCATGTTGTTGCA
                      ____________________________________________________________
consensus             GCCTAATGTCATTAATGATTTCATTAAGCTTCTTTGACAACGGATTGTCATGTTGTTGCA
 
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rJMSF029J15-          GCACAAACTGAGCAGGAATTTCTTCAACAGAAGAAATGCCTAACAATTGGCGCATGATAT
JMFS027C07+           GCACAAACTGAGCAGGAATTTCTTCAACAGAAGAAATGCCTAACAATTGGCGCATGATAT
                      ____________________________________________________________
consensus             GCACAAACTGAGCAGGAATTTCTTCAACAGAAGAAATGCCTAACAATTGGCGCATGATAT
 
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rJMSF029J15-          CAGGATCCGCAGAGCTCCCAACATAAATTAAACAATCCTCACCATTCTCAAGAAGATATA
JMFS027C07+           CAGGATCCGCAGAGCTCCCAACATAAATTAAACAATCCTCACCATTCTCAAGAAGATATA
                      ____________________________________________________________
consensus             CAGGATCCGCAGAGCTCCCAACATAAATTAAACAATCCTCACCATTCTCAAGAAGATATA
 
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rJMSF029J15-          TCCCAGAGTCACTGATATGCTCACTGGAAAGTGGGATAGAAGGTGGAATAAGAGGCCCAT
JMFS027C07+           TCCCAGAGTCACTGATATGCTCACTGGAAAGTGGGATAGAAGGTGGAATAAGAGGCCCAT
                      ____________________________________________________________
consensus             TCCCAGAGTCACTGATATGCTCACTGGAAAGTGGGATAGAAGGTGGAATAAGAGGCCCAT
 
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rJMSF029J15-          CAGCCTCCTTCGAGTTGAGCTCATGAATGGCTATCATTCTAGGAGACACAAATGGAATTG
JMFS027C07+           CAGCCTCCTTCGAGTTGAGCTCATGAATGGCTATCATTCTAGGAGACACAAATGGAATTG
                      ____________________________________________________________
consensus             CAGCCTCCTTCGAGTTGAGCTCATGAATGGCTATCATTCTAGGAGACACAAATGGAATTG
 
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rJMSF029J15-          CAAGTGGAGCA                                                 
JMFS027C07+           CAAGTGGAGCAGAGAGAGGAGAGACATAATTGATCCAAAATGATCTATCGTCTATACGAC
                      ____________________________________________________________
consensus             CAAGTGGAGCAGAGAGAGGAGAGACATAATTGATCCAAAATGATCTATCGTCTATACGAC