Contig 010423:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS024E02Sequence441010423 (2)emb|CDP15610.1|6e-17unnamed protein product [Coffea canephora]
JMSF041M24Sequence766016852ref|XP_004253108.2|5e-66PREDICTED: protein NRT1/ PTR FAMILY 1.2-like isoform X1 [Solanum lycopersicum]721010423 (2)ref|XP_009607662.1|1e-52PREDICTED: protein NRT1/ PTR FAMILY 1.2-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+                                      TGGATAGTATTATACGACAGACTACTCCTGCC
                      ____________________________________________________________
consensus                                         TGGATAGTATTATACGACAGACTACTCCTGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          TGTAGCATCAAGAATCAGAGGAAACACAGTCCATTTNGGCACCAAATCAAGAATGGGATT
                      ____________________________________________________________
consensus             TGTAGCATCAAGAATCAGAGGAAACACAGTCCATTTNGGCACCAAATCAAGAATGGGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          TGGGATCTTTGTGTCCTTCTGGTATGCAGTCCTGGTGGGCAAAGTAGAGAGCATCCGACG
                      ____________________________________________________________
consensus             TGGGATCTTTGTGTCCTTCTGGTATGCAGTCCTGGTGGGCAAAGTAGAGAGCATCCGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          AAGCCTTGCAATCAAACAGGAACACTCATCAGACAACCTCGGAGATAGTAAAATGTCAAT
                      ____________________________________________________________
consensus             AAGCCTTGCAATCAAACAGGAACACTCATCAGACAACCTCGGAGATAGTAAAATGTCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          ACTATGGGTAGTGCCGCAGTATGCGCTCATGGGAATCGCAGTGGGGTCCAATGCTGTGGC
                      ____________________________________________________________
consensus             ACTATGGGTAGTGCCGCAGTATGCGCTCATGGGAATCGCAGTGGGGTCCAATGCTGTGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          ACAGAACCAGTTCTTCATTTCTGAATTTCCCCGAAGCATGTCGACTATAGCTTCCACTCT
                      ____________________________________________________________
consensus             ACAGAACCAGTTCTTCATTTCTGAATTTCCCCGAAGCATGTCGACTATAGCTTCCACTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          TTACGCGCTTGGCTATTCCTTGGCGAGCTTGCTGATGAGCAGCATCAACGAATTGAGCAT
JMFS024E02-                                                  CAGCATCAACGAATTGAGCAT
                      ____________________________________________________________
consensus             TTACGCGCTTGGCTATTCCTTGGCGAGCTTGCTGATGAGCAGCATCAACGAATTGAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          AAATAGTGGAAATGGGAGTTGGATAACAAGCGACATAAACGAGGGTCACTATGATTACTT
JMFS024E02-           AAATAGTGGAAATGGGAGTTGGATAACAAGCGACATAAACGAGGGTCACTATGATTACTT
                      ____________________________________________________________
consensus             AAATAGTGGAAATGGGAGTTGGATAACAAGCGACATAAACGAGGGTCACTATGATTACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          CTACTGGGTTCTTGCTGGGTTAAGCATGGTTAACTTTCTCCTGTTTCTAATTTGTAGCAG
JMFS024E02-           CTACTGGGTTCTTGCTGGGTTAAGCATGGTTAACTTTCTCCTGTTTCTAATTTGTAGCAG
                      ____________________________________________________________
consensus             CTACTGGGTTCTTGCTGGGTTAAGCATGGTTAACTTTCTCCTGTTTCTAATTTGTAGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          GTCTTATGGTCCTTCTAAAGACGAGAAACCAGTGGCCATGGAGGAAGATTGAAGAAGAAC
JMFS024E02-           GTCTTATGGTCCTTCTAAAGACGAGAAACCAGTGGCCATGGAGGAAGATTGAAGAAGAAC
                      ____________________________________________________________
consensus             GTCTTATGGTCCTTCTAAAGACGAGAAACCAGTGGCCATGGAGGAAGATTGAAGAAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF041M24+          ATGAGTCGTAAAACAAGTCAACTAGGAACATATATATATATATAT               
JMFS024E02-           ATGAGTCGTAAAACAAGTCAACTAGGAACATATATATATATATATATATATATATATATA
                      ____________________________________________________________
consensus             ATGAGTCGTAAAACAAGTCAACTAGGAACATATATATATATATATATATATATATATATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024E02-           TATATATATATATATATATATATATATATATATATATCTTAACATGCATATGGTATATAT
                      ____________________________________________________________
consensus             TATATATATATATATATATATATATATATATATATATCTTAACATGCATATGGTATATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024E02-           GTTAGACATAAATAATGTAAAGATACTAAATAATAACATACGAGAAACCTGACCTCGTAA
                      ____________________________________________________________
consensus             GTTAGACATAAATAATGTAAAGATACTAAATAATAACATACGAGAAACCTGACCTCGTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS024E02-           AAGCGGAAGTGGTAGCCGTGTTGATCTCCAGCCACAGTTGATGTCTTGTTTTGTTTTGCT
                      ____________________________________________________________
consensus             AAGCGGAAGTGGTAGCCGTGTTGATCTCCAGCCACAGTTGATGTCTTGTTTTGTTTTGCT