Contig 010418:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS016G06Sequence627010418 (4)gb|AGS47795.1|4e-66argonaute 8 [Salvia miltiorrhiza]
JMFS018E08Sequence608010418 (4)ref|XP_010653696.1|1e-43PREDICTED: protein argonaute 4A-like [Vitis vinifera] ref|XP_010653697.1| PREDIC
JMFS019F12Sequence609010418 (4)ref|XP_010653696.1|1e-43PREDICTED: protein argonaute 4A-like [Vitis vinifera] ref|XP_010653697.1| PREDIC
JMFS147A09Sequence632010418 (4)gb|AGS47795.1|1e-58argonaute 8 [Salvia miltiorrhiza]

Alignment

This contig is upended


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JMFS016G06+                                                            GAAGTATAACA
                      ____________________________________________________________
consensus                                                              GAAGTATAACA
 
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JMFS016G06+           TCCAACACTCTCACTGCCTCCTGGAAGTTTTCAGACTCCTTCCCTTGAAGCACATCCGCA
JMFS147A09+                                  GAAGTTTTCAGACTCCTTCCCTTGAAGCACATCCGCA
                      ____________________________________________________________
consensus             TCCAACACTCTCACTGCCTCCTGGAAGTTTTCAGACTCCTTCCCTTGAAGCACATCCGCA
 
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JMFS016G06+           ATGGCTTGCATTGGGATTTTTGTTGCATAGCTTATAACCACTAAGTATGTCTTGGACCTA
JMFS147A09+           ATGGCTTGCATTGGGATTTTTGTTGCATAGCTTATAACCACTAAGTATGTCTTGGACCTA
JMFS019F12+                                                               TGGACCTA
JMFS018E08+                                                               TGGACCTA
                      ____________________________________________________________
consensus             ATGGCTTGCATTGGGATTTTTGTTGCATAGCTTATAACCACTAAGTATGTCTTGGACCTA
 
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JMFS016G06+           GGTTGCCTCTTTGATCTCTTCCTGTCACCCTTATCTGGGCTACCGTCTGGGCTTCCATCT
JMFS147A09+           GGTTGCCTCTTTGATCTCTTCCTGTCACCCTTATCTGGGCTACCGTCTGGGCTTCCATCT
JMFS019F12+           GGTTGCCTCTTTGATCTCTTCCTGTCACCCTTATCTGGGCTACCGTCTGGGCTTCCATCT
JMFS018E08+           GGTTGCCTCTTTGATCTCTTCCTGTCACCCTTATCTGGGCTACCGTCTGGGCTTCCATCT
                      ____________________________________________________________
consensus             GGTTGCCTCTTTGATCTCTTCCTGTCACCCTTATCTGGGCTACCGTCTGGGCTTCCATCT
 
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JMFS016G06+           CCAGTGTTTCTATTAGATGTGAGCTCATCCAATACAACAGTAAACTCCAATGTGTTACTT
JMFS147A09+           CCAGTGTTTCTATTAGATGTGAGCTCATCCAATACAACAGTAAACTCCAATGTGTTACTT
JMFS019F12+           CCAGTGTTTCTATTAGATGTGAGCTCATCCAATACAACAGTAAACTCCAATGTGTTACTT
JMFS018E08+           CCAGTGTTTCTATTAGATGTGAGCTCATCCAATACAACAGTAAACTCCAATGTGTTACTT
                      ____________________________________________________________
consensus             CCAGTGTTTCTATTAGATGTGAGCTCATCCAATACAACAGTAAACTCCAATGTGTTACTT
 
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JMFS016G06+           GGTAATGCACCAAGTGTGAACAATGTCTTCTCACCATCATAGGCAAAATACCTACCTGCA
JMFS147A09+           GGTAATGCACCAAGTGTGAACAATGTCTTCTCACCATCATAGGCAAAATACCTACCTGCA
JMFS019F12+           GGTAATGCACCAAGTGTGAACAATGTCTTCTCACCATCATAGGCAAAATACCTACCTGCA
JMFS018E08+           GGTAATGCACCAAGTGTGAACAATGTCTTCTCACCATCATAGGCAAAATACCTACCTGCA
                      ____________________________________________________________
consensus             GGTAATGCACCAAGTGTGAACAATGTCTTCTCACCATCATAGGCAAAATACCTACCTGCA
 
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JMFS016G06+           AGCTCAGATCTATAAGTTTCATACACTTGATCCATAATTCTCCTTCCAACACCCTTTGCT
JMFS147A09+           AGCTCAGATCTATAAGTTTCATACACTTGATCCATAATTCTCCTTCCAACACCCTTTGCT
JMFS019F12+           AGCTCAGATCTATAAGTTTCATACACTTGATCCATAATTCTCCTTCCAACACCCTTTGCT
JMFS018E08+           AGCTCAGATCTATAAGTTTCATACACTTGATCCATAATTCTCCTTCCAACACCCTTTGCT
                      ____________________________________________________________
consensus             AGCTCAGATCTATAAGTTTCATACACTTGATCCATAATTCTCCTTCCAACACCCTTTGCT
 
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JMFS016G06+           TCAGCAGGGTTTCGATCTTCATACATTAAGGAAACACTGTACTGGAAGAAGCATCCATCA
JMFS147A09+           TCAGCAGGGTTTCGATCTTCATACATTAAGGAAACACTGTACTGGAAGAAGCATCCATCA
JMFS019F12+           TCAGCAGGGTTTCGATCTTCATACATTAAGGAAACACTGTACTGGAAGAAGCATCCATCA
JMFS018E08+           TCAGCAGGGTTTCGATCTTCATACATTAAGGAAACACTGTACTGGAAGAAGCATCCATCA
                      ____________________________________________________________
consensus             TCAGCAGGGTTTCGATCTTCATACATTAAGGAAACACTGTACTGGAAGAAGCATCCATCA
 
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JMFS016G06+           GTGTTTGCCAAGCTCACCCTGAAGTGATTCGTGAGAAGCTGAATCTTCTGGCCCTTTGTA
JMFS147A09+           GTGTTTGCCAAGCTCACCCTGAAGTGATTCGTGAGAAGCTGAATCTTCTGGCCCTTTGTA
JMFS019F12+           GTGTTTGCCAAGCTCACCCTGAAGTGATTCGTGAGAAGCTGAATCTTCTGGCCCTTTGTA
JMFS018E08+           GTGTTTGCCAAGCTCACCCTGAAGTGATTCGTGAGAAGCTGAATCTTCTGGCCCTTTGTA
                      ____________________________________________________________
consensus             GTGTTTGCCAAGCTCACCCTGAAGTGATTCGTGAGAAGCTGAATCTTCTGGCCCTTTGTA
 
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JMFS016G06+           CCAAAACCACGACGCTCCATTACAGCACGTTTACCCATTGAAACTACTTTTGGTGTAACA
JMFS147A09+           CCAAAACCACGACGCTCCATTACAGCACGTTTACCCATTGAAACTACTTTTGGTGTAACA
JMFS019F12+           CCAAAACCACGACGCTCCATTACAGCACGTTTACCCATTGAAACTACTTTTGGTGTAACA
JMFS018E08+           CCAAAACCACGACGCTCCATTACAGCACGTTTACCCATTGAAACTACTTTTGGTGTAACA
                      ____________________________________________________________
consensus             CCAAAACCACGACGCTCCATTACAGCACGTTTACCCATTGAAACTACTTTTGGTGTAACA
 
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JMFS016G06+           TTTGGTGGTAGAGGTGGTGGTGGAGGCAGAGGCAGTGGAGGCTCCATTTCTAGTGAATAT
JMFS147A09+           TTTGGTGGTAGAGGTGGTGGTGGAGGCAGAGGCAGTGGAGGCTCCATTTCTAGTGAATAT
JMFS019F12+           TTTGGTGGTAGAGGTGGTGGTGGAGGCAGAGGCAGTGGAGGCTCCATTTCTAGTGAATAT
JMFS018E08+           TTTGGTGGTAGAGGTGGTGGTGGAGGCAGAGGCAGTGGAGGCTCCATTTCTAGTGAATAT
                      ____________________________________________________________
consensus             TTTGGTGGTAGAGGTGGTGGTGGAGGCAGAGGCAGTGGAGGCTCCATTTCTAGTGAATAT
 
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JMFS019F12+           ATATCTGACATATGTATATCCCCCTACGGCCCCACACACATATTATACATACATGATCCG
JMFS018E08+           ATATCTGACATATGTATATCCCCCTACGGCCCCACACACATATTATACATACATGATCCG
                      ____________________________________________________________
consensus             ATATCTGACATATGTATATCCCCCTACGGCCCCACACACATATTATACATACATGATCCG
 
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JMFS019F12+           CAATATAAAAAACCAAGATAATCCATAGAAACATAGAAGAGAAATAAAAGAGAAGATCAG
JMFS018E08+           CAATATAAAAAACCAAGATAATCCATAGAAACATAGAAGAGAAATAAAAGAGAAGATCAG
                      ____________________________________________________________
consensus             CAATATAAAAAACCAAGATAATCCATAGAAACATAGAAGAGAAATAAAAGAGAAGATCAG