Contig 010417:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS017C05Sequence618010417 (2)ref|XP_011082824.1|1e-22PREDICTED: translation initiation factor IF-2, chloroplastic isoform X1 [Sesamu
JMFS090E08Sequence634010417 (2)ref|XP_010060813.1|7e-46PREDICTED: translation initiation factor IF-2, chloroplastic-like isoform X1 [E

Alignment

This contig is upended


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JMFS090E08+                                 AGTTTGCACACCATCAGGTTTGATTCCCTTCGTGTAGA
                      ____________________________________________________________
consensus                                   AGTTTGCACACCATCAGGTTTGATTCCCTTCGTGTAGA
 
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JMFS090E08+           AGTAACTAAGAATTTCACCTTCACTAATAGTTAAGTTGTAGGCCAACTCCTCAATTAACA
                      ____________________________________________________________
consensus             AGTAACTAAGAATTTCACCTTCACTAATAGTTAAGTTGTAGGCCAACTCCTCAATTAACA
 
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JMFS090E08+           TGCCATCTTCATCAACCTCCAGAATTTCAACTTTAACAGGAGCAGCCTCTTTAGCTGCCT
                      ____________________________________________________________
consensus             TGCCATCTTCATCAACCTCCAGAATTTCAACTTTAACAGGAGCAGCCTCTTTAGCTGCCT
 
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JMFS090E08+           GCAATCTTGCTGCCTTACGACTTGCCTTGGTCCATTTTCTACCTTTCCTTGCAGTAATAG
JMFS017C05+                                                     CTTTCCTTGCAGTAATAG
                      ____________________________________________________________
consensus             GCAATCTTGCTGCCTTACGACTTGCCTTGGTCCATTTTCTACCTTTCCTTGCAGTAATAG
 
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JMFS090E08+           AAACATCCAGTTCTGATGCCTCGTCATGGTCATCATCAACTACCATTCGCCTGCGCAGTC
JMFS017C05+           AAACATCCAGTTCTGATGCCTCGTCATGGTCATCATCAACTACCATTCGCCTGCGCAGTC
                      ____________________________________________________________
consensus             AAACATCCAGTTCTGATGCCTCGTCATGGTCATCATCAACTACCATTCGCCTGCGCAGTC
 
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JMFS090E08+           CTCCTGATGCACCACTCTTTTTACGGAACTCATCCTTGAACCTAGATGGAGCACTCTTTC
JMFS017C05+           CTCCTGATGCACCACTCTTTTTACGGAACTCATCCTTGAACCTAGATGGAGCACTCTTTC
                      ____________________________________________________________
consensus             CTCCTGATGCACCACTCTTTTTACGGAACTCATCCTTGAACCTAGATGGAGCACTCTTTC
 
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JMFS090E08+           CAGGTTTTGAAGGGCTCTTTGCGGGTTTTGGTGGGGCTAAAACTGCTTTAGAAACCAGAG
JMFS017C05+           CAGGTTTTGAAGGGCTCTTTGCGGGTTTTGGTGGGGCTAAAACTGCTTTAGAAACCAGAG
                      ____________________________________________________________
consensus             CAGGTTTTGAAGGGCTCTTTGCGGGTTTTGGTGGGGCTAAAACTGCTTTAGAAACCAGAG
 
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JMFS090E08+           GATCAGCAACTGGTTTCTTAGAAGCAAATTTGTCAACTAATATTGGTTGGCGTTCTTTGG
JMFS017C05+           GATCAGCAACTGGTTTCTTAGAAGCAAATTTGTCAACTAATATTGGTTGGCGTTCTTTGG
                      ____________________________________________________________
consensus             GATCAGCAACTGGTTTCTTAGAAGCAAATTTGTCAACTAATATTGGTTGGCGTTCTTTGG
 
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JMFS090E08+           CCTTTGCAGGTGCCCCAGTAGCGGCTGGGGGCTTAGGAGCTGCCCCAACATCCTTCAAGA
JMFS017C05+           CCTTTGCAGGTGCCCCAGTAGCGGCTGGGGGCTTAGGAGCTGCCCCAACATCCTTCAAGA
                      ____________________________________________________________
consensus             CCTTTGCAGGTGCCCCAGTAGCGGCTGGGGGCTTAGGAGCTGCCCCAACATCCTTCAAGA
 
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JMFS090E08+           TAACCGCTCTCTTAACTACAGGTGGAGGAGCTACAGGTGGAGGAGGAGGAGGAGCTACAG
JMFS017C05+           TAACCGCTCTCTTAACTACAGGTGGAGGAGCTACAGGTGGAGGAGGAGGAGGAGCTACAG
                      ____________________________________________________________
consensus             TAACCGCTCTCTTAACTACAGGTGGAGGAGCTACAGGTGGAGGAGGAGGAGGAGCTACAG
 
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JMFS090E08+           ATGGTCTTGCTTGCAACATGGGTTCAACTTTCTGAGGTGGCTGAGGGGGTCTTAGA    
JMFS017C05+           ATGGTCTTGCTTGCAACATGGGTTCAACTTTCTGAGGTGGCTGAGGGGGTCTTAGAGGAG
                      ____________________________________________________________
consensus             ATGGTCTTGCTTGCAACATGGGTTCAACTTTCTGAGGTGGCTGAGGGGGTCTTAGAGGAG
 
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JMFS017C05+           CAGCAGGTTGAGACTCGGTCTTCTCTGTGCTGCTTGTTTTTAGTTCTTGTTTTGGAGGTT
                      ____________________________________________________________
consensus             CAGCAGGTTGAGACTCGGTCTTCTCTGTGCTGCTTGTTTTTAGTTCTTGTTTTGGAGGTT
 
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JMFS017C05+           GCTTTACAGCATTTTGTACTGTAGGTACCGGATTCCCTTTCCTCCAGACACTCTTCGACG
                      ____________________________________________________________
consensus             GCTTTACAGCATTTTGTACTGTAGGTACCGGATTCCCTTTCCTCCAGACACTCTTCGACG
 
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JMFS017C05+           TACTAGAATTTTGCTGGGGAATAGCCATTGAATTAATCGGTTTGCCATTTTTTGCTTCAA
                      ____________________________________________________________
consensus             TACTAGAATTTTGCTGGGGAATAGCCATTGAATTAATCGGTTTGCCATTTTTTGCTTCAA