Contig 010413:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS005G05Sequence369010413 (2)
JMFS014G10Sequence639010413 (2)ref|XP_009594664.1|1e-77PREDICTED: phytochrome C [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFS005G05-                                               CTGCTTCAGTCCATGCTCAAAGGT
                      ____________________________________________________________
consensus                                                 CTGCTTCAGTCCATGCTCAAAGGT
 
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JMFS005G05-           TAAGAATCAGGAAAGTCATATACAGGTTGCTGGTTTAACTCAATTACCAGCAGAAAATTC
                      ____________________________________________________________
consensus             TAAGAATCAGGAAAGTCATATACAGGTTGCTGGTTTAACTCAATTACCAGCAGAAAATTC
 
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JMFS005G05-           CTGATTCCAGGTAATACTGTACAAGGCAGAATGTTCGGTTGCTTTCAATGGAGGAACCAC
                      ____________________________________________________________
consensus             CTGATTCCAGGTAATACTGTACAAGGCAGAATGTTCGGTTGCTTTCAATGGAGGAACCAC
 
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JMFS005G05-           AAATGGGCCGAAACCCTTTGCTGCAGATGCAGATGCAACATTACTGCCATTTTGTTTATC
                      ____________________________________________________________
consensus             AAATGGGCCGAAACCCTTTGCTGCAGATGCAGATGCAACATTACTGCCATTTTGTTTATC
 
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JMFS005G05-           AACTCGAGCCTGGTTTTGCACCACCTCATTCTTTATTATGGTTGTTGCTGAAGAGGACGA
                      ____________________________________________________________
consensus             AACTCGAGCCTGGTTTTGCACCACCTCATTCTTTATTATGGTTGTTGCTGAAGAGGACGA
 
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JMFS005G05-           GGCAGATCGGGCAAGCCATGATGTTTGAGTACTCGTCTGCCATAATTAAGGTGCAGTTTC
JMFS014G10+                                TGTTTGAGTACTCGTCTGCCATAATTAAGGTGCAGTTTC
                      ____________________________________________________________
consensus             GGCAGATCGGGCAAGCCATGATGTTTGAGTACTCGTCTGCCATAATTAAGGTGCAGTTTC
 
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JMFS005G05-           TCCCCAAGCAGGCGGTGAGCACACTGATGATTGAAGTTATTGATG               
JMFS014G10+           TCCCCAAGCAGGCGGTGAGCACACTGATGATTGAAGTTATTGATGGTCGCTTCTTAGAGA
                      ____________________________________________________________
consensus             TCCCCAAGCAGGCGGTGAGCACACTGATGATTGAAGTTATTGATGGTCGCTTCTTAGAGA
 
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JMFS014G10+           TGCCGGAAATTCTAGTAATATTATGAATGATGACCTCTCTGCCTCTCGAAGATACTGTAC
                      ____________________________________________________________
consensus             TGCCGGAAATTCTAGTAATATTATGAATGATGACCTCTCTGCCTCTCGAAGATACTGTAC
 
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JMFS014G10+           AGTGCCATTCATAATTTTAATAAGTTTCTGGCTTATATACAACCCAAGACCTTCCCTCGA
                      ____________________________________________________________
consensus             AGTGCCATTCATAATTTTAATAAGTTTCTGGCTTATATACAACCCAAGACCTTCCCTCGA
 
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JMFS014G10+           CATGCTTTGTTTATAGTTGAACATTTCCTGGATTAGCTCTTCTGGAATTCCCGGGGCTGG
                      ____________________________________________________________
consensus             CATGCTTTGTTTATAGTTGAACATTTCCTGGATTAGCTCTTCTGGAATTCCCGGGGCTGG
 
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JMFS014G10+           ATGTGTGATCCGAAATTCAAGATGCACTACATGCATCTTGGCTCCAATCTGCTCCCTTCT
                      ____________________________________________________________
consensus             ATGTGTGATCCGAAATTCAAGATGCACTACATGCATCTTGGCTCCAATCTGCTCCCTTCT
 
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JMFS014G10+           TGCAATAATTCTGAATAGAACGGATGATTCTTCAAAAAGAGGTGTAAAGAGTACAGCAGT
                      ____________________________________________________________
consensus             TGCAATAATTCTGAATAGAACGGATGATTCTTCAAAAAGAGGTGTAAAGAGTACAGCAGT
 
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JMFS014G10+           TGTCAAGAAGTCTGAGAGCACTTGTTGAATCCTCAAATTGTCTCCAAACAAGTACAAGGA
                      ____________________________________________________________
consensus             TGTCAAGAAGTCTGAGAGCACTTGTTGAATCCTCAAATTGTCTCCAAACAAGTACAAGGA
 
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JMFS014G10+           TGATGCTTCAACAGGTAAATCGCACATGATCTGCACCTGGATCTCCCGACTTGGAATCAT
                      ____________________________________________________________
consensus             TGATGCTTCAACAGGTAAATCGCACATGATCTGCACCTGGATCTCCCGACTTGGAATCAT
 
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JMFS014G10+           AGCTTGATTTACGACTGCTTTAATAGCCTCACCAAGACTGAACTCGCAACAGTTCATTTC
                      ____________________________________________________________
consensus             AGCTTGATTTACGACTGCTTTAATAGCCTCACCAAGACTGAACTCGCAACAGTTCATTTC
 
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JMFS014G10+           CGTATAGCTTTCTTCAATACTTTCAATATCGGTATCATCAATGATCTTAGCCAGCTGTTC
                      ____________________________________________________________
consensus             CGTATAGCTTTCTTCAATACTTTCAATATCGGTATCATCAATGATCTTAGCCAGCTGTTC