Contig 010411:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS011E11Sequence602010411 (6)
JMFS057C05Sequence637010411 (6)ref|XP_008241890.1|3e-10PREDICTED: U-box domain-containing protein 5-like, partial [Prunus mume]
JMFS094C02Sequence626010411 (6)ref|XP_009371612.1|3e-32PREDICTED: U-box domain-containing protein 5-like [Pyrus x bretschneideri] ref|X
JMFS108A08Sequence626010411 (6)ref|XP_009603280.1|6e-46PREDICTED: U-box domain-containing protein 5 [Nicotiana tomentosiformis] ref|XP_
JMFS141C12Sequence626010411 (6)ref|XP_008241890.1|3e-10PREDICTED: U-box domain-containing protein 5-like, partial [Prunus mume]
JMSF026M03Sequence672010411 (6)ref|XP_009371612.1|1e-28PREDICTED: U-box domain-containing protein 5-like [Pyrus x bretschneideri] ref|X697005854 (2)ref|XP_009603280.1|4e-25PREDICTED: U-box domain-containing protein 5 [Nicotiana tomentosiformis] ref|XP_

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS108A08+ AAGATCAGCAACTAA
                      ____________________________________________________________
consensus AAGATCAGCAACTAA
 
. : . : . : . : . : . :
JMFS108A08+ CTGAGAAATCTCTGCAGCCAGCATAACGGGGACCATATGTTGCATCTCGCCTAAGCTTCG
JMFS094C02+ AAGCTTCG
                      ____________________________________________________________
consensus CTGAGAAATCTCTGCAGCCAGCATAACGGGGACCATATGTTGCATCTCGCCTAAGCTTCG
 
. : . : . : . : . : . :
JMFS108A08+ CTCCAGTAACTTCGTTGACTTTTTGCATCTTGCGAGTATAACATCACCCGTTAGAGCCAA
JMFS094C02+ CTCCAGTAACTTCGTTGACTTTTGCATCNTTGCGAGTATAACATCACCCGTTAGAGCCAA
JMSF026M03+ CGAGTATAACATCACCCGTTAGAGCCAA
                      ____________________________________________________________
consensus CTCCAGTAACTTCGTTGACTTTTTGCTTCTTGCGAGTATAACATCACCCGTTAGAGCCAA
 
. : . : . : . : . : . :
JMFS108A08+ ATAGATCTTACTGGATTCACTGCATTGCTGAAGTATTAACTTGGCCTTGTCGATCGCTTG
JMFS094C02+ ATAGATCTTACTGGATTCACTGCATTGCTGAAGTATTAACTTGGCCTTGTCGATCGCTTG
JMSF026M03+ ATAGATCTTACTGGATTCACTGCATTGCTGAAGTATTAACTTGGCCTTGTCGATCGCTTG
                      ____________________________________________________________
consensus ATAGATCTTACTGGATTCACTGCATTGCTGAAGTATTAACTTGGCCTTGTCGATCGCTTG
 
. : . : . : . : . : . :
JMFS108A08+ GTTCAATAGGCAAAGTGCCTCCAATCCCGATGTGCATCGAGGTCGAGATGCTTCTATTTC
JMFS094C02+ GTTCAATAGGCAAAGTGCCTCCAATCCCGATGTGCATCGAGGTCGAGATGCTTCTATTTC
JMSF026M03+ GTTCAATAGGCAAAGTGCCTCCAATCCCGATGTGCATCGAGGTCGAGATGCTTCTATTTC
JMFS141C12+ GTGCATCGAGGTCGAGATGCTTCTATTTC
JMFS057C05+ GCATCGAGGTCGAGATGCTTCTATTTC
                      ____________________________________________________________
consensus GTTCAATAGGCAAAGTGCCTCCAATCCCGATGTGCATCGAGGTCGAGATGCTTCTATTTC
 
. : . : . : . : . : . :
JMFS108A08+ CGGAAGTATTTCCAAGGCTCGAGTAACAAACTTGATCAATTCCGAACACATTAGAAGATG
JMFS094C02+ CGGAAGTATTTCCAAGGCTCGAGTAACAAACTTGATCAATTCCGAACACATTAGAAGATG
JMSF026M03+ CGGAAGTATTTCCAAGGCTCGAGTAACAAACTTGATCAATTCCGAACACATTAGAAGATG
JMFS141C12+ CGGAAGTATTTCCAAGGCTCGAGTAACAAACTTGATCAATTCCGAACACATTAGAAGATG
JMFS057C05+ CGGAAGTATTTCCAAGGCTCGAGTAACAAACTTGATCAATTCCGAACACATTAGAAGATG
                      ____________________________________________________________
consensus CGGAAGTATTTCCAAGGCTCGAGTAACAAACTTGATCAATTCCGAACACATTAGAAGATG
 
. : . : . : . : . : . :
JMFS108A08+ CACCTTAATAGACTGAGGAGACGGGAGTGCTTCTGCACCTTCAGTGGGATCACTCCCCAT
JMFS094C02+ CACCTTAATAGACTGAGGAGACGGGAGTGCTTCTGCACCTTCAGTGGGATCACTCCCCAT
JMSF026M03+ CACCTTAATAGACTGAGGAGACGGGAGTGCTTCTGCACCTTCAGTGGGATCACTCCCCAT
JMFS141C12+ CACCTTAATAGACTGAGGAGACGGGAGTGCTTCTGCACCTTCAGTGGGATCACTCCCCAT
JMFS057C05+ CACCTTAATAGACTGAGGAGACGGGAGTGCTTCTGCACCTTCAGTGGGATCACTCCCCAT
JMFS011E11+ AT
                      ____________________________________________________________
consensus CACCTTAATAGACTGAGGAGACGGGAGTGCTTCTGCACCTTCAGTGGGATCACTCCCCAT
 
. : . : . : . : . : . :
JMFS108A08+ AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
JMFS094C02+ AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
JMSF026M03+ AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
JMFS141C12+ AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
JMFS057C05+ AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
JMFS011E11+ AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
                      ____________________________________________________________
consensus AAAGAAGGATTATCAGTGACACACAGATGTATGGTTAAACTGCAAACAGAAGAATCAGAA
 
. : . : . : . : . : . :
JMFS108A08+ AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
JMFS094C02+ AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
JMSF026M03+ AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
JMFS141C12+ AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
JMFS057C05+ AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
JMFS011E11+ AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
                      ____________________________________________________________
consensus AGATGATGGATTCCAGGCAAAATTTCAAACTTGAAGCACTAAAACCTAGTTCAAACTCAA
 
. : . : . : . : . : . :
JMFS108A08+ GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
JMFS094C02+ GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
JMSF026M03+ GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
JMFS141C12+ GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
JMFS057C05+ GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
JMFS011E11+ GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
                      ____________________________________________________________
consensus GAAAAGCTGCAATCTTTCTTAACTTGTTGCCCAGATAAGAAAACCCCACTCTTTTAAGAT
 
. : . : . : . : . : . :
JMFS108A08+ GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
JMFS094C02+ GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
JMSF026M03+ GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
JMFS141C12+ GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
JMFS057C05+ GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
JMFS011E11+ GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
                      ____________________________________________________________
consensus GCCCAAAAATGAAAAATCCCACTTGTCTTCCCAAGTGGATAAGCCTAGAGATTCTGGGTC
 
. : . : . : . : . : . :
JMFS108A08+ ACCACAACCGA
JMFS094C02+ ACCACAACCGACGGTGCCATGTAAGAACCCACGAACTAGGAACAGCACATGAATTCACCA
JMSF026M03+ ACCACAACCGACGGTGCCATGTAAGAACCCACGAACTAGGAACAGCACATGAATTCACCA
JMFS141C12+ ACCACAACCGACGGTGCCATGTAAGAACCCACGAACTAGGAACAGCACATGAATTCACCA
JMFS057C05+ ACCACAACCGACGGTGCCATGTAAGAACCCACGAACTAGGAACAGCACATGAATTCACCA
JMFS011E11+ ACCACAACCGACGGTGCCATGTAAGAACCCACGAACTAGGAACAGCACATGAATTCACCA
                      ____________________________________________________________
consensus ACCACAACCGACGGTGCCATGTAAGAACCCACGAACTAGGAACAGCACATGAATTCACCA
 
. : . : . : . : . : . :
JMFS094C02+ TTAAAGCAACCACCTAAC
JMSF026M03+ TTAAAGCAACCACCTAACTCACATAGGAAAATCCAAAAGAATACCATTCAATTTCAAGGC
JMFS141C12+ TTAAAGCAACCACCTAACTCACATAGGAAAATCCAAAAGAATACCATTCAATTTCAAGGC
JMFS057C05+ TTAAAGCAACCACCTAACTCACATAGGAAAATCCAAAAGAATACCATTCAATTTCAAGGC
JMFS011E11+ TTAAAGCAACCACCTAACTCACATAGGAAAATCCAAAAGAATACCATTCAATTTCAAGGC
                      ____________________________________________________________
consensus TTAAAGCAACCACCTAACTCACATAGGAAAATCCAAAAGAATACCATTCAATTTCAAGGC
 
. : . : . : . : . : . :
JMSF026M03+ CCCAACTACACCTCAGAGGCACAGAGGAGAGAGAGAGACCTG
JMFS141C12+ CCCAACTACACCTCAGAGGCACAGAGGAGAGAGAGAGACCTGTGAAGTTGAAGTATAGTA
JMFS057C05+ CCCAACTACACCTCAGAGGCACAGAGGAGAGAGAGAGACCTGTGAAGTTGAAGTATAGTA
JMFS011E11+ CCCAACTACACCTCAGAGGCACAGAGGAGAGAGAGAGACCTGTGAAGTTGAAGTATAGTA
                      ____________________________________________________________
consensus CCCAACTACACCTCAGAGGCACAGAGGAGAGAGAGAGACCTGTGAAGTTGAAGTATAGTA
 
. : . : . : . : . : . :
JMFS141C12+ GACTTTACGTAAAATAGCGGGTAACCTGCTAACCACTACTACGATACTACCCAGGGA
JMFS057C05+ GACTTTACGTAAAATAGCGGGTAACCTGCTAACCACTACTACGATACTACCCAGGGATAG
JMFS011E11+ GACTTTACGTAAAATAGCGGGTAACCTGCTAACCACTACTACGATACTACCCAGGGATAG
                      ____________________________________________________________
consensus GACTTTACGTAAAATAGCGGGTAACCTGCTAACCACTACTACGATACTACCCAGGGATAG
 
. : . : . : . : . : . :
JMFS057C05+ AAGATTGGAA
JMFS011E11+ AAGATTGGAAGTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGAA
                      ____________________________________________________________
consensus AAGATTGGAAGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGAA
 
. : . : . : . : . : . :
JMFS011E11+ CCGAAATAAAGAAGAAAAGGGTATATAGGGAGGATTGAGGAAGCATCCAAAAGCGCAGAC
                      ____________________________________________________________
consensus CCGAAATAAAGAAGAAAAGGGTATATAGGGAGGATTGAGGAAGCATCCAAAAGCGCAGAC