Contig 010407:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS009C11Sequence618010407 (2)ref|XP_002510554.1|2e-41dead box ATP-dependent RNA helicase, putative [Ricinus communis] gb|EEF52741.1|
JMFS024A03Sequence599010407 (2)ref|XP_002510554.1|2e-56dead box ATP-dependent RNA helicase, putative [Ricinus communis] gb|EEF52741.1|

Alignment

This contig is upended


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JMFS024A03+                                                           AGCCTGTAATAG
                      ____________________________________________________________
consensus                                                             AGCCTGTAATAG
 
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JMFS024A03+           CACTCCCACATATATCACGACCAGTTAATGCCAAAGGAATACAAGCAGCCTGAATTGGGG
JMFS009C11+                                                     AAGCAGCCTGAATTGGGG
                      ____________________________________________________________
consensus             CACTCCCACATATATCACGACCAGTTAATGCCAAAGGAATACAAGCAGCCTGAATTGGGG
 
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JMFS024A03+           TGGGTTTAGCATAGCCTAATGCTTCACAAGCTCGAAGCAATGGCCTAGACAGATGAAGCT
JMFS009C11+           TGGGTTTAGCATAGCCTAATGCTTCACAAGCTCGAAGCAATGGCCTAGACAGATGAAGCT
                      ____________________________________________________________
consensus             TGGGTTTAGCATAGCCTAATGCTTCACAAGCTCGAAGCAATGGCCTAGACAGATGAAGCT
 
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JMFS024A03+           CCATGAACGAGTTAGCATGGAATGAGACTCCCTCAGCTGACGCAAAGAATGATTTTCTAT
JMFS009C11+           CCATGAACGAGTTAGCATGGAATGAGACTCCCTCAGCTGACGCAAAGAATGATTTTCTAT
                      ____________________________________________________________
consensus             CCATGAACGAGTTAGCATGGAATGAGACTCCCTCAGCTGACGCAAAGAATGATTTTCTAT
 
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JMFS024A03+           CGACATTACTTGTGTCAACGTCGTCATCGTCATCCTCCGGAACATAGTCCTCCTGGTGGT
JMFS009C11+           CGACATTACTTGTGTCAACGTCGTCATCGTCATCCTCCGGAACATAGTCCTCCTGGTGGT
                      ____________________________________________________________
consensus             CGACATTACTTGTGTCAACGTCGTCATCGTCATCCTCCGGAACATAGTCCTCCTGGTGGT
 
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JMFS024A03+           GCGGCTCGTAATCGCTATCGCCGTCGTCTTCCTCGTCGTCGTCGGCGGCAATTGGAGCCG
JMFS009C11+           GCGGCTCGTAATCGCTATCGCCGTCGTCTTCCTCGTCGTCGTCGGCGGCAATTGGAGCCG
                      ____________________________________________________________
consensus             GCGGCTCGTAATCGCTATCGCCGTCGTCTTCCTCGTCGTCGTCGGCGGCAATTGGAGCCG
 
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JMFS024A03+           CGCGTTGTTGGAGAGCCTTGGAGATTTTGTAATCCACTGAAGTGGTGCTCCGGCGAGCAT
JMFS009C11+           CGCGTTGTTGGAGAGCCTTGGAGATTTTGTAATCCACTGAAGTGGTGCTCCGGCGAGCAT
                      ____________________________________________________________
consensus             CGCGTTGTTGGAGAGCCTTGGAGATTTTGTAATCCACTGAAGTGGTGCTCCGGCGAGCAT
 
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JMFS024A03+           GTTCATCGGCGACGGATTCGGAATAGGTTGAGAAGTCCCACGGCGACTGCGATTTCTTAT
JMFS009C11+           GTTCATCGGCGACGGATTCGGAATAGGTTGAGAAGTCCCACGGCGACTGCGATTTCTTAT
                      ____________________________________________________________
consensus             GTTCATCGGCGACGGATTCGGAATAGGTTGAGAAGTCCCACGGCGACTGCGATTTCTTAT
 
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JMFS024A03+           TTTTAGCTCGGGAGCTAGTTTCGTTTTCCCCTATGCCGTCGTCATCCTCCTCTTCTTCTT
JMFS009C11+           TTTTAGCTCGGGAGCTAGTTTCGTTTTCCCCTATGCCGTCGTCATCCTCCTCTTCTTCTT
                      ____________________________________________________________
consensus             TTTTAGCTCGGGAGCTAGTTTCGTTTTCCCCTATGCCGTCGTCATCCTCCTCTTCTTCTT
 
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JMFS024A03+           CGCTTTGACCGTCGTACGCGTATTCAACTTCTTCATCGCTGGGAGGTTCGAACACGAAAT
JMFS009C11+           CGCTTTGACCGTCGTACGCGTATTCAACTTCTTCATCGCTGGGAGGTTCGAACACGAAAT
                      ____________________________________________________________
consensus             CGCTTTGACCGTCGTACGCGTATTCAACTTCTTCATCGCTGGGAGGTTCGAACACGAAAT
 
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JMFS024A03+           CGGAAGTAACCATTTGAGAGCGAAGTACGGCCAGCTCACAAGCAGCC             
JMFS009C11+           CGGAAGTAACCATTTGAGAGCGAAGTACGGCCAGCTCACAAGCAGCCGGAGTCCGTCAAT
                      ____________________________________________________________
consensus             CGGAAGTAACCATTTGAGAGCGAAGTACGGCCAGCTCACAAGCAGCCGGAGTCCGTCAAT
 
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JMFS009C11+           GGAGGAGGGTTTAGGAGTTTGGACACCAAAATATCACAGGGTTTTACAATTTTGAGAAAT
                      ____________________________________________________________
consensus             GGAGGAGGGTTTAGGAGTTTGGACACCAAAATATCACAGGGTTTTACAATTTTGAGAAAT