| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN038C23 | Sequence | 622 | 010400 (8) | ref|XP_002309328.1| | 9e-115 | putative SNARE family protein [Populus trichocarpa] ref|XP_011033466.1| PREDICTE | |||||
| JMFN044C15 | Sequence | 628 | 010400 (8) | ref|XP_002309328.1| | 3e-62 | putative SNARE family protein [Populus trichocarpa] ref|XP_011033466.1| PREDICTE | |||||
| JMSF021M22 | Sequence | 395 | 010400 (8) | ref|XP_008388798.1| | 5e-55 | PREDICTED: VAMP-like protein YKT61 [Malus domestica] | 697 | 010400 (8) | ref|XP_002309328.1| | 3e-85 | putative SNARE family protein [Populus trichocarpa] ref|XP_011033466.1| PREDICTE |
| JMSF023E04 | Sequence | 753 | 010400 (8) | ref|XP_007011973.1| | 3e-102 | SNARE-like superfamily protein [Theobroma cacao] gb|EOY29592.1| SNARE-like super | |||||
| JMSF036P06 | Sequence | 691 | 010400 (8) | gb|EYU31781.1| | 1e-107 | hypothetical protein MIMGU_mgv1a014114mg [Erythranthe guttata] | |||||
| JMSF052A16 | Sequence | 451 | 010400 (8) | ref|XP_007011973.1| | 9e-50 | SNARE-like superfamily protein [Theobroma cacao] gb|EOY29592.1| SNARE-like super | 857 | 010400 (8) | ref|XP_002309328.1| | 3e-119 | putative SNARE family protein [Populus trichocarpa] ref|XP_011033466.1| PREDICTE |
This contig is upended
. : . : . : . : . : . :
JMSF052A16- GGTGGA
____________________________________________________________
consensus GGTGGA
. : . : . : . : . : . :
JMSF052A16- CACTTTTTTTTTTCTTTCCCTAAAACANAATTCAAANATCTAATTGGAATACNAAAACTT
____________________________________________________________
consensus CACTTTTTTTTTTCTTTCCCTAAAACANAATTCAAANATCTAATTGGAATACNAAAACTT
. : . : . : . : . : . :
JMSF052A16- GCANGCAAAGNGATACNATTCATTATTANAGAGAGTTTTTATTTCNAATTTTTTTGTTTC
JMSF021M22- GATACGATTCATTATTAGAGAGAGTTTTTATTTCGAATTTTTTTGTTTC
____________________________________________________________
consensus GCANGCAAAGNGATACGATTCATTATTAGAGAGAGTTTTTATTTCGAATTTTTTTGTTTC
. : . : . : . : . : . :
JMSF052A16- NGATTCTATTTTAAANATANAGCGGNGGAAATGAANATCACGGCGTTATTGGTACTGAAA
JMSF021M22- TGATTCTATTTTANAGATAGAGCGGTGGAAATGAAGATCACGGCGTTATTGGTACTGAAA
JMFN038C23- TGATTCTATTTTAGAGATAGAGCGGTGGAAATGAAGATCACGGCGTTATTGGTACTGAAA
rJMSF052A16+ GATTCTATTTTAGAGATAGAGCGGTGGAAATGAAGATCACGGCGTTATTGGTACTGAAA
____________________________________________________________
consensus TGATTCTATTTTAGAGATAGAGCGGTGGAAATGAAGATCACGGCGTTATTGGTACTGAAA
. : . : . : . : . : . :
JMSF052A16- TGCGGACCTGACGGGTCGNATCCGGNGATCCNGGCNAACGCGTCGGACGTTAGCCACTTC
JMSF021M22- TGCGGACCTGACNGGNCGGATCCGGTGATCCTGGCTAACGCGTCGGACGTTAGCCACTTC
JMFN038C23- TGCGGACCTGACGGGTCGGATCCGGTGATCCTGGCGAACGCGTCGGACGTTAGCCACTTC
rJMSF052A16+ TGCGGACCTGACGGGTCGGATCCGGTGATCCTGGCGAACGCGTCGGACGTTAGCCACTTC
rJMSF023E04+ TCGGACGTTAGCCACTTC
____________________________________________________________
consensus TGCGGACCTGACGGGTCGGATCCGGTGATCCTGGCGAACGCGTCGGACGTTAGCCACTTC
. : . : . : . : . : . :
JMSF052A16- GGCTACTTCCANAGATCCAGCGTCAAGGAATTCATCGTCTTCGTAGGCCGGACTGTCGCC
JMSF021M22- GGCTACTTCCAGAGATCCNNCGTCAAGGAATTCATCGTCTTCGTAGGCCGGACTGTCGCC
JMFN038C23- GGCTACTTCCAGAGATCCAGCGTCAAGGAATTCATCGTCTTCGTAGGCCGGACTGTCGCC
rJMSF021M22+ TCTTCGTAGGCCGGACTGTCGCC
rJMSF036P06+ TACTTCCAGAGACCCAGCGTTAGGGAATTCATCATATTCGTCGGTCGGACCGTCGCC
rJMSF052A16+ GGCTACTTCCAGAGATCCAGCGTCAAGGAATTCATCGTCTTCGTAGGCCGGACTGTCGCC
rJMSF023E04+ GGCTACTTCCAGAGATCCAGCGTCAAGGAATTCATCGTCTTCGTAGGCCGGACTGTCGCC
____________________________________________________________
consensus GGCTACTTCCAGAGATCCAGCGTCAAGGAATTCATCGTCTTCGTAGGCCGGACTGTCGCC
. : . : . : . : . : . :
JMSF052A16- AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCAGCACGAAAAGTACATGGTACATGCA
JMSF021M22- AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCANCACGAANAGTACATGGTACATGCN
JMFN038C23- AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCAGCACGAAGAGTACATGGTACATGCA
rJMSF021M22+ AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCAGCACGAAGAGTACATGGTACATGCA
rJMSF036P06+ AGACGCACCCCTCCCGGCCAACGCCAATCCGTCCAGCACGAAGAGTACAAGGTGCATTCA
rJMSF052A16+ AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCAGCACGAAGAGTACATGGTACATGCA
rJMSF023E04+ AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCAGCACGAAGAGTACATGGTACATGCA
____________________________________________________________
consensus AAACGGACCTCTCCCGGCCAGCGTCAATCCGTTCAGCACGAAGAGTACATGGTACATGCA
. : . : . : . : . : . :
JMSF052A16- TATAACCAAAANGGCTTANGTACGTTGGGTTTTATGGACAATCACTATCCAGTTCGAAGN
JMSF021M22- TATAACCNAAATGGCTTATGTACGTTGGGTTTTATGGACAATCACTATCCNNTTCGAAGT
JMFN038C23- TATAACCAAAATGGCTTATGTACGTTGGGTTTTATGGACAATCACTATCCAGTTCGAAGT
rJMSF021M22+ TATAACCAAAATGGCTTATGTACGTTGGGTTTTATGGACAATCACTATCCAGTTCGAAGT
rJMSF036P06+ TATAACCGTAATGGCTTATGTGCATTGGGTTTTATGGATGATCCCTACCCGGTTCGAAGT
rJMSF052A16+ TATAACCAAAATGGCTTATGTACGTTGGGTTTTATGGACAATCACTATCCAGTTCGAAGT
rJMSF023E04+ TATAACCAAAATGGCTTATGTACGTTGGGTTTTATGGACAATCACTATCCAGTTCGAAGT
JMFN044C15+ TGGGTTTTATGGACAATCACTATCCAGTTCGAAGT
____________________________________________________________
consensus TATAACCAAAATGGCTTATGTACGTTGGGTTTTATGGACAATCACTATCCAGTTCGAAGT
. : . : . : . : . : . :
JMSF052A16- GCATTTTCAGNGCTCAACCAGGTCC
JMSF021M22- GCATTTTCAGTGCTCAACCNGGTCCTGGATGA
JMFN038C23- GCATTTTCAGTGCTCAACCAGGTCCTGGATGAGTACCAAAAGAATTTTGGTGAGACATGG
rJMSF021M22+ GCATTTTCAGTGCTCAACCAGGTCCTGGATGAGTACCAAAAGAATTTNGGTGAGACATGG
rJMSF036P06+ GCTTTTTCACTGCTAAATCAGGTCATGGATGAGTACCTAAAAATTTTTGGTGAGACATGG
rJMSF052A16+ GCATTTTCAGTGCTCAACCAGGTCCTGGATGAGTACCAAAAGAATTTTGGTGAGACATGG
rJMSF023E04+ GCATTTTCAGTGCTCAACCAGGTCCTGGATGAGTACCAAAAGAATTTTGGTGAGACATGG
JMFN044C15+ GCATTTTCAGTGCTCAACCAGGTCCTGGATGAGTACCAAAAGAATTTTGGTGAGACATGG
____________________________________________________________
consensus GCATTTTCAGTGCTCAACCAGGTCCTGGATGAGTACCAAAAGAATTTTGGTGAGACATGG
. : . : . : . : . : . :
JMFN038C23- AGGTCTGCACAATCTGACAGTAC------TCAACAATGGCCTTATCTAAATGAAGCTTTA
rJMSF021M22+ AGGTCTGCACAATCNGACAGTAC------TCAACAATGGCCTNATCTAAATGAAGCTTTA
rJMSF036P06+ AGATCTGCTCAATCTGATAGTACTCAAAGTCAACAATGGCCTTATTTATTTGAAGCTCTA
rJMSF052A16+ AGGTCTGCACAATCTGACAGTAC------TCAACAATGGCCTTATCTAAATGAAGCTTTA
rJMSF023E04+ AGGTCTGCACAATCTGACAGTAC------TCAACAATGGCCTTATCTAAATGAAGCTTTA
JMFN044C15+ AGGTCTGCACAATCTGACAGTAC------TCAACAATGGCCTTATCTAAATGAAGCTTTA
____________________________________________________________
consensus AGGTCTGCACAATCTGACAGTAC------TCAACAATGGCCTTATCTAAATGAAGCTTTA
. : . : . : . : . : . :
JMFN038C23- ACTAGGTTTCAGGATCCTGCTGAAGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTGGAT
rJMSF021M22+ ACTAGGTTTCAGGATCCTGCNGAAGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTGGAT
rJMSF036P06+ AATAAATTTCAGGATCCTGCGGAAGCTGACAAGCTGTTGAAAATTCAAAGGGAGTTGGAT
rJMSF052A16+ ACTAGGTTTCAGGATCCTGCTGAAGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTGGAT
rJMSF023E04+ ACTAGGTTTCAGGATCCTGCTGAAGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTGGAT
JMFN044C15+ ACTAGGTTTCAGGATCCTGCTGAAGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTGGAT
____________________________________________________________
consensus ACTAGGTTTCAGGATCCTGCTGAAGCTGATAAGCTGTTGAAAATTCAGAGGGAGTTGGAT
. : . : . : . : . : . :
JMFN038C23- GAAACAAAAATTATTCTTCATAAGACAATTGACAGTGTTCTAGAACGAGGTGAGAAACTT
rJMSF021M22+ GNAACAAAAATTATTCTTCATAAGACAATTGACAGTGTTCTAGAACGAGGTGAGAAACTT
rJMSF036P06+ GAAACAAAAATTATTCTTCACAAGACAATTGACAGTGTTCTAGAACGTGGTGAGAAGCTT
rJMSF052A16+ GAAACAAAAATTATTCTTCATAAGACAATTGACAGTGTTCTAGAACGAGGTGAGAAACTT
rJMSF023E04+ GAAACAAAAATTATTCTTCATAAGACAATTGACAGTGTTCTAGAACGAGGTGAGAAACTT
JMFN044C15+ GAAACAAAAATTATTCTTCATAAGACAATTGACAGTGTTCTAGAACGAGGTGAGAAACTT
____________________________________________________________
consensus GAAACAAAAATTATTCTTCATAAGACAATTGACAGTGTTCTAGAACGAGGTGAGAAACTT
. : . : . : . : . : . :
JMFN038C23- GACAGTTTGGTTGATAAGAGTTCGGATCTCAGTGCTGCTTCCCAGATGTTCTANCAGCAG
rJMSF021M22+ GACAGTTTGGTTGATAAGAGTTCGGATCTCAGTGCTGCTTCCCAGATGTTCTACAAGCAG
rJMSF036P06+ GACAGTTTGGTTGAGAAGAGTTCAGATCTCAGTGCAGCTTCACAGATGTTTTACAAGCAG
rJMSF052A16+ GACAGTTTGGTTGATAAGAGTTCGGATCTCAGTGCTGCTTCCCAGATGTTCTACAAGCAG
rJMSF023E04+ GACAGTTTGGTTGATAAGAGTTCGGATCTCAGTGCTGCTTCCCAGATGTTCTACAAGCAG
JMFN044C15+ GACAGTTTGGTTGATAAGAGTTCGGATCTCAGTGCTGCTTCCCAGATGTTCTACAAGCAG
____________________________________________________________
consensus GACAGTTTGGTTGATAAGAGTTCGGATCTCAGTGCTGCTTCCCAGATGTTCTACAAGCAG
. : . : . : . : . : . :
JMFN038C23- GCGAAGAAAACC
rJMSF021M22+ GCGAAGAAAACCAATCAATGCTGCACAATTTTATAAANGGTTGAGAGTCGTAGCCTCGTA
rJMSF036P06+ GCAAAGAAAACAAACCAATGCTGTACAATTTTATAAA
rJMSF052A16+ GCGAAGAAAACCAATCAATGCTGCACAATTTTATAAATGGTTGAGAGTCGTAGCCTCGTA
rJMSF023E04+ GCGAAGAAAACCAATCAATGCTGCACAATTTTATAAATGGTTGAGAGTCGTAGCCTCGTA
JMFN044C15+ GCGAAGAAAACCAATCAATGCTGCACAATTTTATAAATGGTTGAGAGTCGTAGCCTCGTA
____________________________________________________________
consensus GCGAAGAAAACCAATCAATGCTGCACAATTTTATAAATGGTTGAGAGTCGTAGCCTCGTA
. : . : . : . : . : . :
rJMSF021M22+ GGGGACTGCTCTGCTCTTCTCATCCAAGGATTTCAAGCATTAATGTAANATAAAGTGCCA
rJMSF052A16+ GGGGACTGCTCTGCTCTTCTCATCCAAGGATTTCAAGCATTAATGTAATATAAAGTGCCA
rJMSF023E04+ GGGGACTGCTCTGCTCTTCTCATCCAAGGATTTCAAGCATTAATGTAATATAAAGTGCCA
JMFN044C15+ GGGGACTGCTCTGCTCTTCTCATCCAAGGATTTCAAGCATTAATGTAATATAAAGTGCCA
____________________________________________________________
consensus GGGGACTGCTCTGCTCTTCTCATCCAAGGATTTCAAGCATTAATGTAATATAAAGTGCCA
. : . : . : . : . : . :
rJMSF021M22+ CAAAAATTGGTGTTTATAGTTATTTATTCGTGTGAGCTTGAATCGTTCCATTCTCTTGTA
rJMSF052A16+ CAAAAATTGGTGTTTATAGTTATTTATTCGTGTGAGCTTGAATCGTTCCATTCTCTTGTA
rJMSF023E04+ CAAAAATTGGTGTTTATAGTTATTTATTCGTGTGAGCTTGAATCGTTCCATTCTCTTGTA
JMFN044C15+ CAAAAATTGGTGTTTATAGTTATTTATTCGTGTGAGCTTGAATCGTTCCATTCTCTTGTA
____________________________________________________________
consensus CAAAAATTGGTGTTTATAGTTATTTATTCGTGTGAGCTTGAATCGTTCCATTCTCTTGTA
. : . : . : . : . : . :
rJMSF021M22+ CTCTCTGGTGTCAGGACAAGGACTCACCATAGCATNCTAAAAAGTGTTAA
rJMSF052A16+ CTCTCTGGTGTCAGGACAAGGACTCACCATAGCATACTAAAAAGTGTTAA
rJMSF023E04+ CTCTCTGGTGTCAGGACAAGGACTCACCATAGCATACTAAAAAGTGTTAACTGTTACCAG
JMFN044C15+ CTCTCTGGTGTCAGGACAAGGACTCACCATAGCATACTAAAAAGTGTTAACTGTTA-CAG
____________________________________________________________
consensus CTCTCTGGTGTCAGGACAAGGACTCACCATAGCATACTAAAAAGTGTTAACTGTTACCAG
. : . : . : . : . : . :
rJMSF023E04+ TAC
JMFN044C15+ TACATCAGTATACTCTGCTCATATTCTTGGATACTGCTATTTAAATTTGGAGACATCTTT
____________________________________________________________
consensus TACATCAGTATACTCTGCTCATATTCTTGGATACTGCTATTTAAATTTGGAGACATCTTT