Contig 010360:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010M22Sequence625010360 (4)ref|XP_006347908.1|9e-13PREDICTED: chromatin modification-related protein EAF1-like isoform X2 [Solanum
JMFS011E02Sequence640010360 (4)ref|XP_006347908.1|4e-32PREDICTED: chromatin modification-related protein EAF1-like isoform X2 [Solanum
JMSF035L02Sequence657008002 (2)666010360 (4)ref|XP_009762887.1|8e-25PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Nicotia
JMSF039M21Sequence677008002 (2)817010360 (4)ref|XP_006347908.1|2e-33PREDICTED: chromatin modification-related protein EAF1-like isoform X2 [Solanum

Alignment

This contig is upended


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rJMSF039M21+                   GCTGAATCAACAAGAGATCCCNGGAGAGAGTCAAGGACGTGGGGCCCAAGC
                      ____________________________________________________________
consensus                      GCTGAATCAACAAGAGATCCCNGGAGAGAGTCAAGGACGTGGGGCCCAAGC
 
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JMFS011E02-              AGACAAGTGGTGGTCCTGGTGGACGA-GGGGGCAAGAAATTGAGATCTCATGACGGA
rJMSF039M21+          GCAAGACAAGTGGTGGTCCTGGTGGACGAGGGGGGCAAGAAATTGAGATCTCATGACGGA
                      ____________________________________________________________
consensus             GCAAGACAAGTGGTGGTCCTGGTGGACGAGGGGGGCAAGAAATTGAGATCTCATGACGGA
 
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JMFS011E02-           AGAAGAAAACCCGCTGAGCCTCCTAAACCTAAACAAATCCCTTTAATATGTGAGCTCTGT
rJMSF039M21+          AGAAGAAAACCCGCTGAGCCTCCTAAACCTAAACAAATCCCTTTAATATGTGAGCTCTGT
rJMSF035L02+                                                  CTTTAATATGTGAGCTCTGT
                      ____________________________________________________________
consensus             AGAAGAAAACCCGCTGAGCCTCCTAAACCTAAACAAATCCCTTTAATATGTGAGCTCTGT
 
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JMFS011E02-           AATGTTACGTGTGAGTCACAAGTTGTTTTCCAAAGTCATCTGCAGGGAAAGAAGCATATA
rJMSF039M21+          AATGTTACGTGTGAGTCACAAGTTGTTTTCCAAAGTCATCTGCAGGGAAAGAAGCATATA
rJMSF035L02+          AATGTTACGTGTGAGTCACAAGTTGTTTTCCAAAGTCATCTGCAGGGAAAGAAGCATATA
JMFN010M22-                                              TCATCTGCAGGGAAAGAAGCATATA
                      ____________________________________________________________
consensus             AATGTTACGTGTGAGTCACAAGTTGTTTTCCAAAGTCATCTGCAGGGAAAGAAGCATATA
 
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JMFS011E02-           TCAAACCGGAAACGCTTCGAGGATTCACAAGCAGTGCTTGGACAAGCAGCAACCCAAGCA
rJMSF039M21+          TCAAACCGGAAACGCTTCGAGGATTCACAAGCAGTGCTTGGACAAGCAGCAACCCAAGCA
rJMSF035L02+          TCAAACCGGAAACGCTTCGAGGATTCACAAGCAGTGCTTGGACAAGCAGCAACCCAAGCA
JMFN010M22-           TCAAACCGGAAACGCTTCGAGGATTCACAAGCAGTGCTTGGACAAGCAGCAACCCAAGCA
                      ____________________________________________________________
consensus             TCAAACCGGAAACGCTTCGAGGATTCACAAGCAGTGCTTGGACAAGCAGCAACCCAAGCA
 
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JMFS011E02-           TTATATCCGGCTCTACAACCAGTTTACCCAGCACTTCCCCAACCTAACCCAGGTCTGGCT
rJMSF039M21+          TTATATCCGGCTCTACAACCAGTTTACCCAGCACTTCCCCAACCTAACCCAGGTCTGGCT
rJMSF035L02+          TTATATCCGGCTCTACAACCAGTTTACCCAGCACTTCCCCAACCTAACCCAGGTCTGGCT
JMFN010M22-           TTATATCCGGCTCTACAACCAGTTTACCCAGCACTTCCCCAACCTAACCCAGGTCTGGCT
                      ____________________________________________________________
consensus             TTATATCCGGCTCTACAACCAGTTTACCCAGCACTTCCCCAACCTAACCCAGGTCTGGCT
 
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JMFS011E02-           ACTCCATTGGATCCTAATCTTCAGCAGCAAAATATTCCTGGTGGTCAGGCCTTTTTGACT
rJMSF039M21+          ACTCCATTGGATCCTAATCTTCAGCAGCAAAATATTCCTGGTGGTCAGGCCTTTTTGACT
rJMSF035L02+          ACTCCATTGGATCCTAATCTTCAGCAGCAAAATATTCCTGGTGGTCAGGCCTTTTTGACT
JMFN010M22-           ACTCCATTGGATCCTAATCTTCAGCAGCAAAATATTCCTGGTGGTCAGGCCTTTTTGACT
                      ____________________________________________________________
consensus             ACTCCATTGGATCCTAATCTTCAGCAGCAAAATATTCCTGGTGGTCAGGCCTTTTTGACT
 
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JMFS011E02-           CAACCGGCACCTTCTCTCCTCCCTCAAGGTCAAGAAGCATCAGCAGCAGCTTTGCCGCCT
rJMSF039M21+          CAACCGGCACCTTCTCTCCTCCCTCAAGGTCAAGAAGCATCAGCAGCAGCTTTGCCGCCT
rJMSF035L02+          CAACCGGCACCTTCTCTCCTCCCTCAAGGTCAAGAAGCATCAGCAGCAGCTTTGCCGCCT
JMFN010M22-           CAACCGGCACCTTCTCTCCTCCCTCAAGGTCAAGAAGCATCAGCAGCAGCTTTGCCGCCT
                      ____________________________________________________________
consensus             CAACCGGCACCTTCTCTCCTCCCTCAAGGTCAAGAAGCATCAGCAGCAGCTTTGCCGCCT
 
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JMFS011E02-           CCCATGTTGCAGTCTCTGGACCATCAAGATCCTAGTCCTCAGTTTCAAAGCCAGTAGATG
rJMSF039M21+          CCCATGTTGCAGTCTCTGGACCATCAAGATCCTAGTCCTCAGTTTCAAAGCCAGTAGATG
rJMSF035L02+          CCCATGTTGCAGTCTCTGGACCATCAAGATCCTAGTCCTCAGTTTCAAAGCCAGTAGATG
JMFN010M22-           CCCATGTTGCAGTCTCTGGACCATCAAGATCCTAGTCCTCAGTTTCAAAGCCAGTAGATG
                      ____________________________________________________________
consensus             CCCATGTTGCAGTCTCTGGACCATCAAGATCCTAGTCCTCAGTTTCAAAGCCAGTAGATG
 
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JMFS011E02-           AAGCCTGTGCCCAGAAGTAATGACCCCTTTGTTTCAGGGTGAGCCTTAGAAAAGAGAATT
rJMSF039M21+          AAGCCTGTGCCCAGAAGTAATGACCCCTTTGTTTCAGGGTGAGCCTTAGAAAAGAGAATT
rJMSF035L02+          AAGCCTGTGCCCAGAAGTAATGACCCCTTTGTTTCAGGGTGAGCCTTAGAAAAGAGAATT
JMFN010M22-           AAGCCTGTGCCCAGAAGTAATGACCCCTTTGTTTCAGGGTGAGCCTTAGAAAAGAGAATT
                      ____________________________________________________________
consensus             AAGCCTGTGCCCAGAAGTAATGACCCCTTTGTTTCAGGGTGAGCCTTAGAAAAGAGAATT
 
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JMFS011E02-           GCTACCAAGAAAGAATTCAACTTCTAGGGTCATTTCACTGATAACTAACTTACTAGTGTG
rJMSF039M21+          GCTACCAAGAAAGAATTCAACTTCTAGGGTCATTTCACTGATAACTAACTTACTAGTGTG
rJMSF035L02+          GCTACCAAGAAAGAATTCAACTTCTAGGGTCATTTCACTGATAACTAACTTACTAGTGTG
JMFN010M22-           GCTACCAAGAAAGAATTCAACTTCTAGGGTCATTTCACTGATAACTAACTTACTAGTGTG
                      ____________________________________________________________
consensus             GCTACCAAGAAAGAATTCAACTTCTAGGGTCATTTCACTGATAACTAACTTACTAGTGTG
 
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JMFS011E02-           TCCTGATTAGATGGTGGTCAGATTCTTGTAAGGAGCTTGCTACT                
rJMSF039M21+          TCCTGATTAGATGGTGGTCAGATTCTTGTAAGGAGCTTGCTACTTCTGGTACAGCCAAGA
rJMSF035L02+          TCCTGATTAGATGGTGGTCAGATTCTTGTAAGGAGCTTGCTACTTCTGGTACAGCCAAGA
JMFN010M22-           TCCTGATTAGATGGTGGTCAGATTCTTGTAAGGAGCTTGCTACTTCTGGTACAGCCAAGA
                      ____________________________________________________________
consensus             TCCTGATTAGATGGTGGTCAGATTCTTGTAAGGAGCTTGCTACTTCTGGTACAGCCAAGA
 
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rJMSF039M21+          TGGAACTTCATGTAACAGTGTTGTTAGATACAGTGTGAATGTGGCTTCTAGAGTCTTTTC
rJMSF035L02+          TGGAACTTCATGTAACAGTGTTGTTAGATACAGTGTGAATGTGGCTTCTAGAGTCTTTTC
JMFN010M22-           TGGAACTTCATGTAACAGTGTTGTTAGATACAGTGTGAATGTGGCTTCTAGAGTCTTTTC
                      ____________________________________________________________
consensus             TGGAACTTCATGTAACAGTGTTGTTAGATACAGTGTGAATGTGGCTTCTAGAGTCTTTTC
 
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rJMSF039M21+          AGACAGCATGGGAAAATAATTAAGAGTATAAAAGCCACATATAAGT              
rJMSF035L02+          AGACAGCATGGGAAAATAATTAAGAGTATAAAAGCCACATATAAGT              
JMFN010M22-           AGACAGCATGGGAAAATAATTAAGAGTATAAAAGCCACATATAAGTGTTATTTAGTCATA
                      ____________________________________________________________
consensus             AGACAGCATGGGAAAATAATTAAGAGTATAAAAGCCACATATAAGTGTTATTTAGTCATA