Contig 010350:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005B06Sequence630010350 (7)ref|XP_004229710.1|3e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN012E21Sequence623010350 (7)ref|XP_004229710.1|2e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN019P07Sequence616010350 (7)ref|XP_004229710.1|2e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN031F21Sequence563010350 (7)ref|XP_004229710.1|9e-50PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN033H13Sequence639010350 (7)ref|XP_004229710.1|3e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN042B02Sequence595010350 (7)ref|XP_004229710.1|2e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN043E01Sequence552010350 (7)ref|XP_004229710.1|1e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN031F21+ CT
                      ____________________________________________________________
consensus CT
 
. : . : . : . : . : . :
JMFN031F21+ AGTCTCGATTTTTTTTTTTTTTTTAAGCCAAAATACTATGTATATTGNCCAAACAGAGAA
                      ____________________________________________________________
consensus AGTCTCGATTTTTTTTTTTTTTTTAAGCCAAAATACTATGTATATTGNCCAAACAGAGAA
 
. : . : . : . : . : . :
JMFN031F21+ TGAAAATAAACATATTTCAGTATTCAAAATCTAGTCTTGATGTTCAATGACATGACAAAG
JMFN033H13+ TTCAGTATTCAAAATCTAGTCTGATGTTTCAATGACATGACAAAG
JMFN019P07+ TGATGTTCAATGACATGACANAG
JMFN042B02+ AAAG
JMFN012E21+ TTCAATGACATGACAAAG
JMFN005B06+ TGATGTTCAATGACATGACAAAG
                      ____________________________________________________________
consensus TGAAAATAAACATATTTCAGTATTCAAAATCTAGTCTTGATGTTCAATGACATGACAAAG
 
. : . : . : . : . : . :
JMFN031F21+ CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN033H13+ CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN043E01+ AAACCGGAGGCAGCGATCCTG
JMFN019P07+ CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN042B02+ CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN012E21+ CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN005B06+ CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
                      ____________________________________________________________
consensus CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
 
. : . : . : . : . : . :
JMFN031F21+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN033H13+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN043E01+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN019P07+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN042B02+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN012E21+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN005B06+ CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
                      ____________________________________________________________
consensus CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
 
. : . : . : . : . : . :
JMFN031F21+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN033H13+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN043E01+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN019P07+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN042B02+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN012E21+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN005B06+ AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
                      ____________________________________________________________
consensus AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
 
. : . : . : . : . : . :
JMFN031F21+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN033H13+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN043E01+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN019P07+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN042B02+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN012E21+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN005B06+ CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
                      ____________________________________________________________
consensus CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
 
. : . : . : . : . : . :
JMFN031F21+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN033H13+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN043E01+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN019P07+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN042B02+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN012E21+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN005B06+ TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
                      ____________________________________________________________
consensus TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
 
. : . : . : . : . : . :
JMFN031F21+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN033H13+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN043E01+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN019P07+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN042B02+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN012E21+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN005B06+ ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
                      ____________________________________________________________
consensus ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
 
. : . : . : . : . : . :
JMFN031F21+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCA-TTTTGGGAAA
JMFN033H13+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN043E01+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN019P07+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN042B02+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN012E21+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN005B06+ ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
                      ____________________________________________________________
consensus ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
 
. : . : . : . : . : . :
JMFN031F21+ GGGCATTAACTCTCAGAGAATT
JMFN033H13+ GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN043E01+ GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN019P07+ GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN042B02+ GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN012E21+ GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN005B06+ GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
                      ____________________________________________________________
consensus GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
 
. : . : . : . : . : . :
JMFN033H13+ ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN043E01+ ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN019P07+ ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN042B02+ ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN012E21+ ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN005B06+ ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
                      ____________________________________________________________
consensus ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
 
. : . : . : . : . : . :
JMFN033H13+ ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT
JMFN043E01+ ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT
JMFN019P07+ ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT
JMFN042B02+ ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT
JMFN012E21+ ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT
JMFN005B06+ ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTTGGGAAGTTG
                      ____________________________________________________________
consensus ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTTGGGAAGTTG