Contig 010350:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN005B06Sequence630010350 (7)ref|XP_004229710.1|3e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN012E21Sequence623010350 (7)ref|XP_004229710.1|2e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN019P07Sequence616010350 (7)ref|XP_004229710.1|2e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN031F21Sequence563010350 (7)ref|XP_004229710.1|9e-50PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN033H13Sequence639010350 (7)ref|XP_004229710.1|3e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN042B02Sequence595010350 (7)ref|XP_004229710.1|2e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]
JMFN043E01Sequence552010350 (7)ref|XP_004229710.1|1e-72PREDICTED: 20 kDa chaperonin, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


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JMFN031F21+                                                                     CT
                      ____________________________________________________________
consensus                                                                       CT
 
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JMFN031F21+           AGTCTCGATTTTTTTTTTTTTTTTAAGCCAAAATACTATGTATATTGNCCAAACAGAGAA
                      ____________________________________________________________
consensus             AGTCTCGATTTTTTTTTTTTTTTTAAGCCAAAATACTATGTATATTGNCCAAACAGAGAA
 
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JMFN031F21+           TGAAAATAAACATATTTCAGTATTCAAAATCTAGTCTTGATGTTCAATGACATGACAAAG
JMFN033H13+                          TTCAGTATTCAAAATCTAGTCTGATGTTTCAATGACATGACAAAG
JMFN019P07+                                                TGATGTTCAATGACATGACANAG
JMFN042B02+                                                                   AAAG
JMFN012E21+                                                     TTCAATGACATGACAAAG
JMFN005B06+                                                TGATGTTCAATGACATGACAAAG
                      ____________________________________________________________
consensus             TGAAAATAAACATATTTCAGTATTCAAAATCTAGTCTTGATGTTCAATGACATGACAAAG
 
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JMFN031F21+           CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN033H13+           CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN043E01+                                                  AAACCGGAGGCAGCGATCCTG
JMFN019P07+           CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN042B02+           CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN012E21+           CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
JMFN005B06+           CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
                      ____________________________________________________________
consensus             CTAGAATACATGAAGCAATGTGCCGTCATCTCCTGAGTTAAACCGGAGGCAGCGATCCTG
 
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JMFN031F21+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN033H13+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN043E01+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN019P07+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN042B02+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN012E21+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
JMFN005B06+           CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
                      ____________________________________________________________
consensus             CACAAGTACAACTCGAAACACTAACGACGCGAAAAATAGCATGTCTGCATTGCCTTTGTA
 
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JMFN031F21+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN033H13+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN043E01+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN019P07+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN042B02+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN012E21+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
JMFN005B06+           AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
                      ____________________________________________________________
consensus             AGTGCGCAATCTATTCGACCACGGCCAACAAGTCACCCTCTTTACAGAAAACATGCCTTT
 
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JMFN031F21+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN033H13+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN043E01+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN019P07+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN042B02+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN012E21+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
JMFN005B06+           CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
                      ____________________________________________________________
consensus             CCTCAGTTCCCAAGTTCACCTCATAAGCATTCACGTCAGAGAAAAGAACCTTCTTCCCAG
 
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JMFN031F21+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN033H13+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN043E01+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN019P07+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN042B02+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN012E21+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
JMFN005B06+           TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
                      ____________________________________________________________
consensus             TCTCCACTTCAGAAACCCCGGTTCCGACAGAGAGAATCTCTCCCATAAGATACCGTTCAA
 
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JMFN031F21+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN033H13+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN043E01+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN019P07+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN042B02+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN012E21+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
JMFN005B06+           ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
                      ____________________________________________________________
consensus             ACTTCACCGCAGATTTAGGGAGCAAAATGCCTCCAGCAGATTTCTCAGGCAACTCCTCTA
 
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JMFN031F21+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCA-TTTTGGGAAA
JMFN033H13+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN043E01+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN019P07+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN042B02+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN012E21+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
JMFN005B06+           ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
                      ____________________________________________________________
consensus             ACCTTATCAAGACTCTATCAGCTTGTGGCACAACCTTTGTGGGTTCCCATTTTTGGGAAA
 
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JMFN031F21+           GGGCATTAACTCTCAGAGAATT                                      
JMFN033H13+           GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN043E01+           GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN019P07+           GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN042B02+           GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN012E21+           GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
JMFN005B06+           GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
                      ____________________________________________________________
consensus             GGGCATTAACTCTCAGAGAATTTCTCCTCAGACCTATTCCAACGGGTCTGGGGGCGGGGG
 
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JMFN033H13+           ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN043E01+           ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN019P07+           ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN042B02+           ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN012E21+           ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
JMFN005B06+           ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
                      ____________________________________________________________
consensus             ATAGAGAAGGGATGTTAATTGGTTGAGAAGTAAAGGGTTTTGCTAAGGAAAGAAATCCAG
 
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JMFN033H13+           ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT         
JMFN043E01+           ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT         
JMFN019P07+           ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT         
JMFN042B02+           ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT         
JMFN012E21+           ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTT         
JMFN005B06+           ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTTGGGAAGTTG
                      ____________________________________________________________
consensus             ACGCCATGGATAAGGAAGGTGCAGAGAGATGAAACTATTGCAGGGAGAGTTGGGAAGTTG