Contig 010346:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN001H09Sequence476010346 (3)ref|XP_006343314.1|6e-87PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [S
JMFN011E06Sequence612010346 (3)ref|XP_002300537.1|2e-52hypothetical protein POPTR_0001s45970g [Populus trichocarpa] gb|EEE85342.1| hypo
JMSF033N15Sequence732010346 (3)ref|XP_009773856.1|2e-99PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Nicoti

Alignment

This contig is upended


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JMFN011E06+                                CATTTCAAGAATTTAAACTATACAAGTATATAAAGAATT
                      ____________________________________________________________
consensus                                  CATTTCAAGAATTTAAACTATACAAGTATATAAAGAATT
 
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JMFN011E06+           TCAGCTTCCCGAGGGCAACCCAACCAAGTTGGTTGGACTATTGACTTTGTAACCATAAGA
rJMSF033N15-                                                             ACCATAAGA
                      ____________________________________________________________
consensus             TCAGCTTCCCGAGGGCAACCCAACCAAGTTGGTTGGACTATTGACTTTGTAACCATAAGA
 
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JMFN011E06+           TTACAATTACAA-GTTCGACTCCGAGGAGCTGGCTAACTATGGACAACTTAGGCTGGTTT
rJMSF033N15-          TTACAATTACAAGGTTCGACTCCGAGGAGCTGGCTAACTATGGACAACTTAGGCTGGTTT
                      ____________________________________________________________
consensus             TTACAATTACAAGGTTCGACTCCGAGGAGCTGGCTAACTATGGACAACTTAGGCTGGTTT
 
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JMFN011E06+           ACTACAAATTTAACTATACCGAGGAGTTTGTGTGCCCTGTATCGATCTGGCTCCAACCCG
rJMSF033N15-          ACTACAAATTTAACTATACCGAGGAGTTTGTGTGCCCTGTATCGATCTGGCTCCAACCCG
                      ____________________________________________________________
consensus             ACTACAAATTTAACTATACCGAGGAGTTTGTGTGCCCTGTATCGATCTGGCTCCAACCCG
 
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JMFN011E06+           AGTTGAAGGGGGAAATTGGGATAGATGTTGTTGTATCAGTTTGAGATGAATCTATATCAA
rJMSF033N15-          AGTTGAAGGGGGAAATTGGGATAGATGTTGTTGTATCAGTTTGAGATGAATCTATATCAA
                      ____________________________________________________________
consensus             AGTTGAAGGGGGAAATTGGGATAGATGTTGTTGTATCAGTTTGAGATGAATCTATATCAA
 
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JMFN011E06+           TGGGCAGTGCTGATGGCCACACAAATGCAGGCCTGAATGGAGGAACATTTGGCACTGGAA
rJMSF033N15-          TGGGCAGTGCTGATGGCCACACAAATGCAGGCCTGAATGGAGGAACATTTGGCACTGGAA
                      ____________________________________________________________
consensus             TGGGCAGTGCTGATGGCCACACAAATGCAGGCCTGAATGGAGGAACATTTGGCACTGGAA
 
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JMFN011E06+           CTGAGCCTAATATGATCTGAACAACATCAGATGTTCTTGGTCTTTCATTAGCAATAGGAT
rJMSF033N15-          CTGAGCCTAATATGATCTGAACAACATCAGATGTTCTTGGTCTTTCATTAGCAATAGGAT
                      ____________________________________________________________
consensus             CTGAGCCTAATATGATCTGAACAACATCAGATGTTCTTGGTCTTTCATTAGCAATAGGAT
 
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JMFN011E06+           GAGAGCAAGCCAGTCCTAGCAGCAGAAGTCTTTTAGCTTCTTCGACGACGAAATCTTCCT
rJMSF033N15-          GAGAGCAAGCCAGTCCTAGCAGCAGAAGTCTTTTAGCTTCTTCGACGACGAAATCTTCCT
                      ____________________________________________________________
consensus             GAGAGCAAGCCAGTCCTAGCAGCAGAAGTCTTTTAGCTTCTTCGACGACGAAATCTTCCT
 
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JMFN011E06+           TCAGCCTTATGTCGACTGCCTCGAGGATCCTCCCATCGCGATGCAGGAACCAAACCCAGT
rJMSF033N15-          TCAGCCTTATGTCGACTGCCTCGAGGATCCTCCCATCGCGATGCAGGAACCAAACCCAGT
                      ____________________________________________________________
consensus             TCAGCCTTATGTCGACTGCCTCGAGGATCCTCCCATCGCGATGCAGGAACCAAACCCAGT
 
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JMFN011E06+           CTACGAGGGACTGGAAGCCGCCAATCCTGGTTCCAGGTCTCTGTCCACACACAACTTCCA
rJMSF033N15-          CTACGAGGGACTGGAAGCCGCCAATCCTGGTTCCAGGTCTCTGTCCACACACAACTTCCA
                      ____________________________________________________________
consensus             CTACGAGGGACTGGAAGCCGCCAATCCTGGTTCCAGGTCTCTGTCCACACACAACTTCCA
 
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JMFN011E06+           GCAACACTGCCCCGAACGCATAGATATCAGACTG                          
rJMSF033N15-          GCAACACTGCCCCGAACGCATAGATATCAGACTGCTCAGTGGCCTTGCCCGTGAGGAGAC
                      ____________________________________________________________
consensus             GCAACACTGCCCCGAACGCATAGATATCAGACTGCTCAGTGGCCTTGCCCGTGAGGAGAC
 
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rJMSF033N15-          ACTCGGGTGCAATGTACCCAATTGTGCCCGCCACTCCCTCGCCCTCAGTATACGAGGTTC
                      ____________________________________________________________
consensus             ACTCGGGTGCAATGTACCCAATTGTGCCCGCCACTCCCTCGCCCTCAGTATACGAGGTTC
 
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rJMSF033N15-          TCTCGTTGTCAAGTGCCCGTGCCAGGCCAAAGTCGCCCAGGCGGGCATTGAAATTGGAGT
JMFN001H09+                         GCCCGTGCCAGGCCAAAGTCGCCCAGGCGGGCATTGAAATTGGAGT
                      ____________________________________________________________
consensus             TCTCGTTGTCAAGTGCCCGTGCCAGGCCAAAGTCGCCCAGGCGGGCATTGAAATTGGAGT
 
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rJMSF033N15-          CGAGCATGATATTGCTGGCTTTGAGGTCTCGATGAACCACCCTCTGCTCGAACTCGTTAT
JMFN001H09+           CGAGCATGATATTGCTGGCTTTGAGGTCTCGATGAACCACCCTCTGCTCGAACTCGTTAT
                      ____________________________________________________________
consensus             CGAGCATGATATTGCTGGCTTTGAGGTCTCGATGAACCACCCTCTGCTCGAACTCGTTAT
 
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rJMSF033N15-          GG                                                          
JMFN001H09+           GGAGATATTGCAAGGCGTAGCCCACGCCAGACACAATTTTACACCGCAATTCCCAACTCA
                      ____________________________________________________________
consensus             GGAGATATTGCAAGGCGTAGCCCACGCCAGACACAATTTTACACCGCAATTCCCAACTCA
 
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JMFN001H09+           ATGGATCCGTTTCACCCCCTATGAAGAGGTGCTGGTCCAAGCTTCCATGGGGCATATACT
                      ____________________________________________________________
consensus             ATGGATCCGTTTCACCCCCTATGAAGAGGTGCTGGTCCAAGCTTCCATGGGGCATATACT
 
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JMFN001H09+           CATACACCAATAGTAGCTTCCCATGCCTATGGCACCACCCTAGAAGCTTGACAAGATGTT
                      ____________________________________________________________
consensus             CATACACCAATAGTAGCTTCCCATGCCTATGGCACCACCCTAGAAGCTTGACAAGATGTT
 
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JMFN001H09+           TATGGCGGAGACGATTGATAATACTAAGCTCAGCCAAGAAATCACCCTGACCCTTGATGC
                      ____________________________________________________________
consensus             TATGGCGGAGACGATTGATAATACTAAGCTCAGCCAAGAAATCACCCTGACCCTTGATGC
 
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JMFN001H09+           TCTCCCTGGAGAACCACTTGACAGCAATCTCCAAACCCTCACCTGCCAACCACCCTTTGT
                      ____________________________________________________________
consensus             TCTCCCTGGAGAACCACTTGACAGCAATCTCCAAACCCTCACCTGCCAACCACCCTTTGT
 
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JMFN001H09+           AAACCACCCCATATCCTCCCTGTCCAAGCTTCTTCTTCTCACCAAAATTCTCTGTAGCTT
                      ____________________________________________________________
consensus             AAACCACCCCATATCCTCCCTGTCCAAGCTTCTTCTTCTCACCAAAATTCTCTGTAGCTT