Contig 010344:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016D05Sequence432010344 (5)404010344 (5)
JMFF028E20Sequence435010344 (5)
JMFF051N02Sequence443010344 (5)387010344 (5)

Alignment

This contig is upended


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JMFF016D05+                                                        TTTTTTTTTTGCAAA
rJMFF051N02-                                                                 GCAAA
JMFF028E20+                                                        TTTTTTTTGAGCAAA
JMFF051N02+                                               ATTTTTTTTTTTTTTTTGAGCAAA
                      ____________________________________________________________
consensus                                                 ATTTTTTTTTTTTTTTTGAGCAAA
 
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JMFF016D05+           AAATGTGTGATATATAACATTGTCAACAAAAATCTGCAATGTGAAATAGGCGCATACTGT
rJMFF051N02-          AAATGTGTGATATATAACATTGTCAACAAAAATCTGCAATGTGAAATAGGCGCATACTGT
JMFF028E20+           AAATGTGTGATATATAACATTGTCAACAAAAATCTGCAATGTGAAATAGGCGCATACTGT
rJMFF016D05-                        TAACATTGTCAACAAAAATCTGCNATGTGAAATAGGCGCATACTGT
JMFF051N02+           AAATGTGTGATATATAACATTGTCAACAAAAATCTGCAATGTGAAATAGGCGCATACTGT
                      ____________________________________________________________
consensus             AAATGTGTGATATATAACATTGTCAACAAAAATCTGCAATGTGAAATAGGCGCATACTGT
 
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JMFF016D05+           AGCTGAATAAAACGTAAAGAATAAACATCAAACACCTAC-AAGGGCGTTTAAAATTTAAC
rJMFF051N02-          AGCTGAATAAAACGTAAAGAATAAACATCAAACACCTACAAAGGGCGTTTAAAATTTAAC
JMFF028E20+           AGCTGAATAAAACGTAAAGAATAAACATCAAACACCTACAAAGGGCGTTTAAAATTTAAC
rJMFF016D05-          AGCTGAATAAAACGTAAAGAATAAACATCAAACACCTAC-AAGGGCGTTTAAAATTTAAC
JMFF051N02+           AGCTGAATAAAACGTAAAGAATAAACATCAAACACCTACAAAGGGCGTTTAAAATTTAAC
                      ____________________________________________________________
consensus             AGCTGAATAAAACGTAAAGAATAAACATCAAACACCTACAAAGGGCGTTTAAAATTTAAC
 
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JMFF016D05+           GACGACGGCAGATGGCGACCTAATCTTCAACCTAGGAAACGTCGCATCCTCTTCTGCAAT
rJMFF051N02-          GACGACGGCAGATGGCGACCTAATCTTCAACCTAGGAAACGTCGCATCCTCTTCTGCAAT
JMFF028E20+           GACGACGGCAGATGGCGACCTAATCTTCAACCTAGGAAACGTCGCATCCTCTTCTGCAAT
rJMFF016D05-          GACGACGGCAGATGGCGACCTAATCTTCAACCTAGGAAACGTCGCATCCTCTTCTGCAAT
JMFF051N02+           GACGACGGCAGATGGCGACCTAATCTTCAACCTAGGAAACGTCGCATCCTCTTCTGCAAT
                      ____________________________________________________________
consensus             GACGACGGCAGATGGCGACCTAATCTTCAACCTAGGAAACGTCGCATCCTCTTCTGCAAT
 
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JMFF016D05+           AAGCTCATGGTCAGGGGCATTCAAGCACCGAGGCACCAGGTTGAGACTGAGATACCTTTA
rJMFF051N02-          AAGCTCATGGTCAGGGGCATTCAAGCACCGAGGCACCAGGTTGAGACTGAGATACCTTTA
JMFF028E20+           AAGCTCATGGTCAGGGGCATTCAAGCACCGAGGCACCAGGTTGAGACTGAGATACCTTTA
rJMFF016D05-          AAGCTCATGGTCAGGGGCATTCAAGCACCGAGGCACCAGGTTGAGACTGAGATACCTTTA
JMFF051N02+           AAGCTCATGGTCAGGGGCATTCAAGCACCGAGGCACCAGGTTGAGACTGAGATACCTTTA
                      ____________________________________________________________
consensus             AAGCTCATGGTCAGGGGCATTCAAGCACCGAGGCACCAGGTTGAGACTGAGATACCTTTA
 
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JMFF016D05+           CCTTCTTACCTCGGCCGCCACCACGAGCAGGTGGTCCCCGACGCTTGGCTCTCCTACGAT
rJMFF051N02-          CCTTCTTACCTCGGCCGCCACCACGAGCAGGTGGTCCCCGACGCTTGGCTCTCCTACGAT
JMFF028E20+           CCTTCTTACCTCGGCCGCCACCACGAGCAGGTGGTCCCCGACGCTTGGCTCTCCTACGAT
rJMFF016D05-          CCTTCTTACCTCGGCCGCCACCACGAGCAGGTGGTCCCCGACGCTTGGCTCTCCTACGAT
JMFF051N02+           CCTTCTTACCTCGGCCGCCACCACGAGCAGGTGGTCCCCGACGCTTGGCTCTCCTACGAT
                      ____________________________________________________________
consensus             CCTTCTTACCTCGGCCGCCACCACGAGCAGGTGGTCCCCGACGCTTGGCTCTCCTACGAT
 
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JMFF016D05+           CCCCACAGACGACCATGGCTAA-GTGTATAACGACGTTGGAGTGAATAGCACACGATGCG
rJMFF051N02-          CCCCACAGACGACCATGGCTAA-GTGTATAACGACGTTGGAGTGAATAGCACACGATGCG
JMFF028E20+           CCCCACAGACGACCATGGCTAA-GTGTATAACGACGTTGGAGTGAATAGCACACGATGCG
rJMFF016D05-          CCCCACAGACGACCATGGCTAANGTGTATAACGACGTTGGAGTGAATAGCACACGATGCG
JMFF051N02+           CCCCACAGACGACCATGGCTAA-GTGTATAACGACGTTGGAGTGAATAGCACACGATGCG
                      ____________________________________________________________
consensus             CCCCACAGACGACCATGGCTAA-GTGTATAACGACGTTGGAGTGAATAGCACACGATGCG
 
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JMFF016D05+           ATGATAGAACGTCATCGACACACACACCTGTGATGAAGAGAGAGAGACCCGAATACAAT 
rJMFF051N02-          ATGATAGAACGTCATCGACAC                                       
JMFF028E20+           ATGATAGAACGTCATCGACACACACACCTGTGATGAAGAGAGAGAGACCCGAATACAAT 
rJMFF016D05-          ATGATAGAACGTCATCGACACACACACCTGTGATGAAGAGAGAGAGACCCGAATACAAT 
JMFF051N02+           ATGATAGAACGTCATCGACACACACACCTGTGATGAAGAGAGAGAGACCCGAATACAATC
                      ____________________________________________________________
consensus             ATGATAGAACGTCATCGACACACACACCTGTGATGAAGAGAGAGAGACCCGAATACAATC