Contig 010341:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002B20Sequence576010341 (6)ref|XP_002285452.1|1e-95PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname799009748 (5)ref|XP_009594705.1|1e-114PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMFF026H01Sequence561010341 (6)ref|XP_002285452.1|5e-96PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname661009748 (5)ref|XP_009594705.1|4e-89PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMFF037E11Sequence578010341 (6)ref|XP_002285452.1|1e-95PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname674009748 (5)ref|XP_009594705.1|1e-90PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMFF051B09Sequence645010341 (6)ref|XP_002285452.1|3e-106PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname554022414ref|XP_009594705.1|8e-50PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMSF012P15Sequence463010341 (6)emb|CDO99306.1|8e-77unnamed protein product [Coffea canephora]714009748 (5)ref|XP_009594705.1|2e-97PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment
JMSF042A04Sequence638010341 (6)ref|XP_002285452.1|6e-104PREDICTED: pre-mRNA-processing factor 19 [Vitis vinifera] emb|CBI23714.3| unname254009748 (5)ref|XP_009594705.1|1e-16PREDICTED: U-box domain-containing protein 72-like isoform X3 [Nicotiana toment

Alignment

This contig is upended


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JMSF042A04+                          CTGTAATAATAGCTGATGAAATCCCAGGACGAATTCTCTTGCCTC
JMFF051B09+                          CTGTAATAATAGCTGATGAAATCCCAGGACGAATCTTCTTGCCTC
                      ____________________________________________________________
consensus                            CTGTAATAATAGCTGATGAAATCCCAGGACGAATTTTCTTGCCTC
 
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JMSF042A04+           CGGGATCCATCTCCACATCTTCAGCAGCTCTTTTCCCATTGCTTAAGGTAGTAGCATTAT
JMFF002B20+                              TTCAGCAGCTCTTTTCCCATTGCTTAAGGTAGTAGCATTAT
JMFF037E11+                              TTCAGCAGCTCTTTTCCCATTGCTTAAGGTAGTAGCATTAT
JMFF026H01+                              TTCAGCAGCTCTTTTCCCATTGCTTAAGGTAGTAGCATTAT
JMFF051B09+           CGGGATCCATCTCCACATCTTCAGCAGCTCTTTCCCCATTGCTTAAGGTAGTAGCATTAT
                      ____________________________________________________________
consensus             CGGGATCCATCTCCACATCTTCAGCAGCTCTTTTCCCATTGCTTAAGGTAGTAGCATTAT
 
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JMSF042A04+           CGGCACTTTCCATGGCTGCTGCACTGGGTAGTTGTCTGTCAGCCTGGGCAAGCAATTCCC
JMFF002B20+           CGGCACTTTCCATGGCTGCTGCACTGGGTAGTTGTCTGTCAGCCTGGGCAAGCAATTCCC
JMFF037E11+           CGGCACTTTCCATGGCTGCTGCACTGGGTAGTTGTCTGTCAGCCTGGGCAAGCAATTCCC
JMFF026H01+           CGGCACTTTCCATGGCTGCTGCACTGGGTAGTTGTCTGTCAGCCTGGGCAAGCAATTCCC
JMFF051B09+           CGGCACTTTCCATGGCTGCTGCACTGGGTAGTTGTCTGTCAGCCTGGGCAAGCAATTCCC
                      ____________________________________________________________
consensus             CGGCACTTTCCATGGCTGCTGCACTGGGTAGTTGTCTGTCAGCCTGGGCAAGCAATTCCC
 
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JMSF042A04+           TTGCCTCATCCCTTTCCTTCTTCAACCTTGCAATCACACGGCAAGCAG---CATGCTGGT
JMFF002B20+           TTGCCTCATCCCTTTCCTTCTTCAACCTTGCAATCACACGGCAAGCAGCATCATGCTGGT
JMFF037E11+           TTGCCTCATCCCTTTCCTTCTTCAACCTTGCAATCACACGGCAAGCAGCATCATGCTGGT
JMFF026H01+           TTGCCTCATCCCTTTCCTTCTTCAACCTTGCAATCACACGGCAAGCAGCATCATGCTGGT
JMSF012P15+                            TTCTTCAACCTTGCAATCACACGGCAAGCAGCATCATGCTGGT
JMFF051B09+           TTGCCTCATCCCTTTCCTTCTTCAACCTTGCAATCACACGGCAAGCAGCATCATGCTGGT
                      ____________________________________________________________
consensus             TTGCCTCATCCCTTTCCTTCTTCAACCTTGCAATCACACGGCAAGCAGCATCATGCTGGT
 
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JMSF042A04+           AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
JMFF002B20+           AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
JMFF037E11+           AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
JMFF026H01+           AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
JMSF012P15+           AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
JMFF051B09+           AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
                      ____________________________________________________________
consensus             AGAGTGCATGGCTTAACTCTTGTCTTGCAGTATGTAATTGTTGCTCCAGTGCAAAATTTG
 
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JMSF042A04+           ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
JMFF002B20+           ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
JMFF037E11+           ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
JMFF026H01+           ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
JMSF012P15+           ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
JMFF051B09+           ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
                      ____________________________________________________________
consensus             ATAGCATCAAACTATCCCATTCAATCTGAAACATTCCCAACATCCCAGGAATACTTGCAG
 
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JMSF042A04+           CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
JMFF002B20+           CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
JMFF037E11+           CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
JMFF026H01+           CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
JMSF012P15+           CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
JMFF051B09+           CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
                      ____________________________________________________________
consensus             CCTGTACAGGTCGGGGTTTCACGATCTTTCCTGTTTTGATTGGGACAATATCATCCATTG
 
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JMSF042A04+           TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
JMFF002B20+           TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
JMFF037E11+           TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
JMFF026H01+           TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
JMSF012P15+           TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
JMFF051B09+           TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
                      ____________________________________________________________
consensus             TCAGAGGCTCTCCAGTAACTGGACATTTACCATAATCCGAGATGTGTCGTTCAATTAAAC
 
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JMSF042A04+           GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
JMFF002B20+           GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
JMFF037E11+           GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
JMFF026H01+           GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
JMSF012P15+           GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
JMFF051B09+           GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
                      ____________________________________________________________
consensus             GCTTCTCGAAGAGCAAACCGGACTTCGTGGAGACAACCGGCTCCTCCGGCACCTCGCCAG
 
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JMSF042A04+           AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
JMFF002B20+           AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
JMFF037E11+           AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
JMFF026H01+           AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
JMSF012P15+           AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
JMFF051B09+           AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
                      ____________________________________________________________
consensus             AAATTGAGCAGTTCATTGTAGAGAGAGATGTGAGAGAGCTAAGATTTCAGCTCAGAGCAA
 
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JMSF042A04+           GCTTTCCTNTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCCGACGGGAAAGATAGC     
JMFF002B20+           GCTTTCCTCTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCCGACGGGAAAGA         
JMFF037E11+           GCTTTCCTCTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCCGACGGGAAAGATAGC     
JMFF026H01+           GCTTTCCTCTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCC                    
JMSF012P15+           GCTTTCCTCTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCCGACGGGAAAGATAGC     
JMFF051B09+           GCTTTCCTCTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCCGACGGGAAAGATAGCGGGGC
                      ____________________________________________________________
consensus             GCTTTCCTCTTCTTCCCTGCTGCTCGGAAGTGGAAGCGCCGACGGGAAAGATAGCGGGGC