| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018F16 | Sequence | 540 | 010340 (5) | emb|CDP06673.1| | 8e-84 | unnamed protein product [Coffea canephora] | 776 | 005429 (4) | ref|WP_037052485.1| | 1e-08 | hypothetical protein [Pseudomonas oleovorans] |
| JMFF026D08 | Sequence | 539 | 010340 (5) | ref|XP_009593629.1| | 1e-80 | PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Nicotiana to | 788 | 005429 (4) | emb|CDM39172.1| | 1e-04 | hypothetical protein BN5_0560 [Pseudomonas pseudoalcaligenes CECT 5344] emb|CDR |
| JMFF028D16 | Sequence | 483 | 010340 (5) | emb|CDP06673.1| | 5e-67 | unnamed protein product [Coffea canephora] | 690 | 005429 (4) | ref|WP_037052485.1| | 1e-08 | hypothetical protein [Pseudomonas oleovorans] |
| JMFF050O07 | Sequence | 626 | 010340 (5) | ref|XP_009765001.1| | 2e-79 | PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X1 [Nicotia | 581 | 005429 (4) | ref|WP_017519164.1| | 2e-05 | hypothetical protein [Pseudomonas nitroreducens] |
| JMFF051M02 | Sequence | 583 | 010340 (5) | emb|CDP06673.1| | 3e-63 | unnamed protein product [Coffea canephora] | 214 | 019197 | |||
This contig is upended
. : . : . : . : . : . :
JMFF050O07+ GCGGCTTGGGCTGTAACTTCGACTATGCCT
____________________________________________________________
consensus GCGGCTTGGGCTGTAACTTCGACTATGCCT
. : . : . : . : . : . :
JMFF050O07+ CCGGCCACGGGGAGGAGAACGTGATCTCTCAGGTGTCCTTGAGAAACTCCTTCCACGTNT
____________________________________________________________
consensus CCGGCCACGGGGAGGAGAACGTGATCTCTCAGGTGTCCTTGAGAAACTCCTTCCACGTNT
. : . : . : . : . : . :
JMFF028D16+ CACCTATA
JMFF050O07+ GAGCTTCTGTGGACTATTTGGACATTTCTNTTCTATATGACCTCTTTCTCCACACCTATA
____________________________________________________________
consensus GAGCTTCTGTGGACTATTTGGACATTTCTNTTCTATATGACCTCTTTCTCCACACCTATA
. : . : . : . : . : . :
JMFF028D16+ GCACTTGTTTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF051M02+ TTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF026D08+ TTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF018F16+ TTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
JMFF050O07+ GCACTTGTTTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
____________________________________________________________
consensus GCACTTGTTTTTCCAATCACCAGCTTTGCAATCACGGGCCCAATGACCTTCAATTCCACA
. : . : . : . : . : . :
JMFF028D16+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF051M02+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF026D08+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF018F16+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
JMFF050O07+ GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
____________________________________________________________
consensus GTTGAAGCAACGACCTGAACCAGGAGGGGGCCCACGACCAAGATAATCTCGGGAACCACC
. : . : . : . : . : . :
JMFF028D16+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF051M02+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF026D08+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF018F16+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
JMFF050O07+ TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
____________________________________________________________
consensus TGGACCCCGTGGCACTCCCTTAGCAAATTCCACAATTATACGGCGTCCATCAACTTCACG
. : . : . : . : . : . :
JMFF028D16+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF051M02+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF026D08+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF018F16+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
JMFF050O07+ CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
____________________________________________________________
consensus CCCATCATAATAACGTCTTGCATCATCAGCATCCCGAGGGTCACTAAAATCAATGAAGGC
. : . : . : . : . : . :
JMFF028D16+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF051M02+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF026D08+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF018F16+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
JMFF050O07+ ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
____________________________________________________________
consensus ATAGTCACGCTTCATGTCCACATCTCGTACTCTCCCGTATTTGCAGAACAAGCGCTCCAA
. : . : . : . : . : . :
JMFF028D16+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF051M02+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF026D08+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF018F16+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
JMFF050O07+ ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
____________________________________________________________
consensus ATCACGAGAACGGGTACGAGAAGACAAATGACCCACATAGAGACGGGTCGCACTACCATA
. : . : . : . : . : . :
JMFF028D16+ CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
JMFF051M02+ CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
JMFF026D08+ CCGATCATCGTAACGAGGCATATTCACCTACCCAGGCTTAGAAGACAACAGCGATTTGAT
JMFF018F16+ CCGATCATCGTAACGAGGCATATTC----ACC
JMFF050O07+ CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
____________________________________________________________
consensus CCGATCATCGTAACGAGGCATATTC----ACCCAGGCTTAGAAGACAACAGCGATTTGAT
. : . : . : . : . : . :
JMFF028D16+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAAC
JMFF051M02+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCGCAAC
JMFF026D08+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAAC
JMFF050O07+ TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAACC
____________________________________________________________
consensus TTTTTTAACCTAAAACCGACGATCTATGAACAGCGGAGAAACAATGGAAATGGCACAACC