| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF050M02 | Sequence | 597 | 010338 (9) | ref|XP_009761341.1| | 6e-21 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] | 585 | 010338 (9) | ref|XP_009761341.1| | 8e-35 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] |
| JMFN034O02 | Sequence | 594 | 010338 (9) | ref|XP_009761341.1| | 3e-30 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] | |||||
| JMSF014D01 | Sequence | 414 | 010338 (9) | 776 | 010338 (9) | ref|XP_009761341.1| | 4e-35 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] | |||
| JMSF035I15 | Sequence | 601 | 010338 (9) | ref|XP_009761341.1| | 1e-29 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] | 696 | 010338 (9) | ref|XP_009761341.1| | 4e-36 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] |
| JMSF036I15 | Sequence | 602 | 010338 (9) | ref|XP_009761341.1| | 2e-29 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] | 740 | 010338 (9) | ref|XP_009761341.1| | 2e-35 | PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMFF050M02- ACCCT
____________________________________________________________
consensus ACCCT
. : . : . : . : . : . :
rJMFF050M02- GGAGAGTTTTTTTTTTTTTTTTGGCTGTATTTATAACAGCATATTATATATACCAAACAT
rJMSF014D01- AACAT
____________________________________________________________
consensus GGAGAGTTTTTTTTTTTTTTTTGGCTGTATTTATAACAGCATATTATATATACCAAACAT
. : . : . : . : . : . :
rJMFF050M02- TTGGAAGAGTAATGCACAAAGATGCTCTCTTTCAAATTGTTTTGACCAAAAAGGCATTGA
rJMSF036I15- ATGCACAAAGATGCTCTCTTTCAAATTGTTTTGACCAAAAAGGCATTGA
rJMSF035I15- ATGCACAAAGATGCTCTCTTTCAAATTGTTTTGACCAAAAAGGCATTGA
rJMSF014D01- TTGGAAGAGTAATGCACAAAGATGCTCTCTTTC-AATTGTTTTGACCAAAAAGGCATTGA
____________________________________________________________
consensus TTGGAAGAGTAATGCACAAAGATGCTCTCTTTCAAATTGTTTTGACCAAAAAGGCATTGA
. : . : . : . : . : . :
rJMFF050M02- ATCAGATCAAGGGCTTGTAGAGAAGTAATATACATTCAAAGTTACTATACTTGTAGTAGT
rJMSF036I15- ATCAGATCAAGGGCTTGTAGAGAAGTAATATACATTCAAAGTTACTATACTTGTAGTAGT
rJMSF035I15- ATCAGATCAAGGGCTTGTAGAGAAGTAATATACATTCAAAGTTACTATACTTGTAGTAGT
rJMSF014D01- ATCAGATCAAGGGCTTGTAGAGAAGTAATATACATTCAAAGTTACTATACTTGTAGTAGT
____________________________________________________________
consensus ATCAGATCAAGGGCTTGTAGAGAAGTAATATACATTCAAAGTTACTATACTTGTAGTAGT
. : . : . : . : . : . :
rJMFF050M02- AGAACTTCTTTGAGCATCTTCTCAACCCAGCACCTCCTGCTTAATATCTTTGATTTTTGC
rJMSF036I15- AGAACTTCTTTGAGCATCTTCTCAACCCAGCACCTCCTGCTTAATATCTTTGATTTTTGC
rJMSF035I15- AGAACTTCTTTGAGCATCTTCTCAACCCAGCACCTCCTGCTTAATATCTTTGATTTTTGC
JMFN034O02+ TGCTTAATATCTTTGATTTTTGC
rJMSF014D01- AGAACTTCTTTGAGCATCTTCTCAACCCAGCACCTCCTGCTTAATATCTTTGATTTTTGC
JMSF035I15+ TTTGC
JMSF036I15+ TTTTGC
____________________________________________________________
consensus AGAACTTCTTTGAGCATCTTCTCAACCCAGCACCTCCTGCTTAATATCTTTGATTTTTGC
. : . : . : . : . : . :
rJMFF050M02- TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
rJMSF036I15- TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
rJMSF035I15- TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
JMFN034O02+ TGCTATCTCCTCTCTACTTTTCTGNAATAGCAGATACCGGATGGTGAACCACACGGTATA
rJMSF014D01- TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
JMSF035I15+ TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
JMSF036I15+ TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
JMFF050M02+ CTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGAT-GTGAACCACACGGTATA
____________________________________________________________
consensus TGCTATCTCCTCTCTACTTTTCTTGAATAGCAGATACCGGATGGTGAACCACACGGTATA
. : . : . : . : . : . :
rJMFF050M02- AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
rJMSF036I15- AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
rJMSF035I15- AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
JMFN034O02+ AGCTAGACCCACGAGTTCCAGCAATTTAGGTAACAGGGGTATAGAATCAATAGCACCAAT
rJMSF014D01- AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
JMSF035I15+ AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
JMSF036I15+ AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
JMFF050M02+ AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
____________________________________________________________
consensus AGCTAGACCCACGAGTTCCAGCAATTTGGGTAACAGGGGTATAGAATCAATAGCACCAAT
. : . : . : . : . : . :
rJMFF050M02- AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
rJMSF036I15- AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
rJMSF035I15- AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
JMFN034O02+ AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
rJMSF014D01- AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
JMSF035I15+ AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
JMSF036I15+ AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
JMSF014D01+ GA
JMFF050M02+ AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
____________________________________________________________
consensus AAGAGCCGAAGTTAACCAAACAGCTAAAATAGCACCACCACCATAAAGGTAAATTGAGGA
. : . : . : . : . : . :
rJMFF050M02- CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
rJMSF036I15- CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
rJMSF035I15- CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
JMFN034O02+ CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
rJMSF014D01- CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
JMSF035I15+ CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
JMSF036I15+ CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
JMSF014D01+ CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
JMFF050M02+ CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
____________________________________________________________
consensus CGAGTTTTCAGGATCAAACTCTATACCGACTTGAGCAAAAATCTTTGACAATTGTGCTTG
. : . : . : . : . : . :
rJMFF050M02- GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
rJMSF036I15- GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
rJMSF035I15- GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
JMFN034O02+ GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTATATCATATTT
rJMSF014D01- GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
JMSF035I15+ GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
JMSF036I15+ GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTN
JMSF014D01+ GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
JMFF050M02+ GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
____________________________________________________________
consensus GAAGTCGAGAGAAGAGTCGTCGTCATTGGATGCCTCATTATATGAAGCTGTATCATATTT
. : . : . : . : . : . :
rJMFF050M02- TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATAC
rJMSF036I15- TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
rJMSF035I15- TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
JMFN034O02+ TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
rJMSF014D01- TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
JMSF035I15+ TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
JMSF036I15+ TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
JMSF014D01+ TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
JMFF050M02+ TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
____________________________________________________________
consensus TTCTTCTTGCTTAGGTGTCTCAGTTTGCACAGGTTCATACACAGTATTCTGTGTAAAACT
. : . : . : . : . : . :
rJMSF036I15- AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
rJMSF035I15- AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
JMFN034O02+ AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
rJMSF014D01- AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
JMSF035I15+ AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
JMSF036I15+ AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATNGGAGTAGTATGGCACTCCTGT
JMSF014D01+ AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
JMFF050M02+ AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
____________________________________________________________
consensus AGATGTTTCCCCAGAGGATGCAAATGTTATAGTTAAATTGGAGTAGTATGGCACTCCTGT
. : . : . : . : . : . :
rJMSF036I15- AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
rJMSF035I15- AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
JMFN034O02+ AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
rJMSF014D01- AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
JMSF035I15+ AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
JMSF036I15+ AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
JMSF014D01+ AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
JMFF050M02+ AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
____________________________________________________________
consensus AACCGGAATGAAGCCGGAAATTGAAGGCTTCTTGAGTGGAAGAGAAGTCTTGGATGGGAG
. : . : . : . : . : . :
rJMSF036I15- GCGAGTATGGGCGTTGGGAGCGGCGGCGAANGGCGTCGGATTTGGAAGATTGGACATGGC
rJMSF035I15- GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGAT
JMFN034O02+ GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
rJMSF014D01- GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
JMSF035I15+ GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
JMSF036I15+ GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
JMSF014D01+ GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
JMFF050M02+ GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
____________________________________________________________
consensus GCGAGTATGGGCGTTGGGAGCGGCGGCGAAGGGCGTCGGATTTGGAAGATTGGACATGGC
. : . : . : . : . : . :
rJMSF036I15- TACACCTCTGCACAATGCCATTTTCTC
JMFN034O02+ TACACCTCTGCACAATGCCATTTTCTCCAGC
rJMSF014D01- TACACCTCTGCACAATGCCATTTTCTCCAGCTACAATACAGTCCTCAAAT
JMSF035I15+ TACACCTCTGCACAATGCCATTTTCTCCAGCTACAATACAGTCCTCAAATTC
JMSF036I15+ TACACCTCTGCACAATGCCATTTTCTCCAGCTACAATACAGTCCTCAAATTC
JMSF014D01+ TACACCTCTGCACAATGCCATTTTCTCCAGCTACAATACAGTCCTCAAATTC
JMFF050M02+ TACACCTCTGCACAATGCCATTTTCTCCAGCTACAATACAGTCCTCAAATTCCAGAATTC
____________________________________________________________
consensus TACACCTCTGCACAATGCCATTTTCTCCAGCTACAATACAGTCCTCAAATTCCAGAATTC