| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF049M01 | Sequence | 503 | 010331 (8) | ref|XP_009791971.1| | 7e-30 | PREDICTED: chloride channel protein CLC-c-like [Nicotiana sylvestris] emb|CAA648 | 537 | 008386 (3) | |||
| JMFS018F02 | Sequence | 621 | 010331 (8) | ref|XP_004248849.1| | 8e-52 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | |||||
| JMFS057F10 | Sequence | 627 | 010331 (8) | ref|XP_004248849.1| | 3e-58 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | |||||
| JMFS091C07 | Sequence | 601 | 010331 (8) | ref|XP_004248849.1| | 2e-59 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | |||||
| JMFS134H02 | Sequence | 616 | 010331 (8) | ref|XP_004248849.1| | 4e-48 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | |||||
| JMFS165E10 | Sequence | 626 | 010331 (8) | ref|XP_004248849.1| | 2e-64 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | |||||
| JMSF008L06 | Sequence | 402 | 010331 (8) | ref|XP_004248849.1| | 5e-11 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | 774 | 008386 (3) | ref|NP_001275140.1| | 1e-56 | chloride channel protein CLC-c-like [Solanum tuberosum] emb|CAA71369.1| chloride |
| JMSF029A03 | Sequence | 709 | 010331 (8) | ref|XP_004248849.1| | 2e-71 | PREDICTED: chloride channel protein CLC-c-like [Solanum lycopersicum] | 721 | 008386 (3) | ref|NP_001275140.1| | 1e-57 | chloride channel protein CLC-c-like [Solanum tuberosum] emb|CAA71369.1| chloride |
This contig is upended
. : . : . : . : . : . :
JMSF029A03+ T
____________________________________________________________
consensus T
. : . : . : . : . : . :
JMFS165E10+ CAACAAATGCACATAGGAATCCAGCACAAA
JMFS091C07+ CAAA
JMSF029A03+ CAGGAATACCAGAGCCAGCAGCTGCAGGCGCAACAAATGCACATAGGAATCCAGCACAAA
____________________________________________________________
consensus CAGGAATACCAGAGCCAGCAGCTGCAGGCGCAACAAATGCACATAGGAATCCAGCACAAA
. : . : . : . : . : . :
JMFS165E10+ TTGCGAGAATCAGATTGCAACCAGCCATTGCAGCAAATGCCTGAAAATACTCTCCCTTGA
JMFS057F10+ TCAGATTGCAACCAGCCATGNCAGCAAATGCCTGAAAATACTCTCCCTTGA
JMFS134H02+ ATCAGATTGCAACCAGCCATTGCAGCAAATGCCTGAAAATACTCTCCCTTGA
JMFS091C07+ TTGCGAGAATCAGATTGCAACCAGCCATTGCAGCAAATGCCTGAAAATACTCTCCCTTGA
JMFS018F02+ TCTCCCTTGA
JMSF029A03+ TTGCGAGAATCAGATTGCAACCAGCCATTGCAGCAAATGCCTGAAAATACTCTCCCTTGA
____________________________________________________________
consensus TTGCGAGAATCAGATTGCAACCAGCCATTGCAGCAAATGCCTGAAAATACTCTCCCTTGA
. : . : . : . : . : . :
JMFS165E10+ GCATTAAGTTGTTACTAAGTAGAAGTTTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
JMFS057F10+ GCATTAAGTTGTTACTAAGTAGAAGTTTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
JMFS134H02+ GCATTAAGTTGTTACTAAGTAGAAG-TTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
JMFS091C07+ GCATTAAGTTGTTACTAAGTAGAAGTTTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
JMFS018F02+ GCATTAAGTTGTTACTAAGTAGAAGTTTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
JMSF029A03+ GCATTAAGTTGTTACTAAGTAGAAGTTTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
____________________________________________________________
consensus GCATTAAGTTGTTACTAAGTAGAAGTTTGAAACCAGCAATATTCTCCACTGCAAGGTTAT
. : . : . : . : . : . :
JMFS165E10+ TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
JMFS057F10+ TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
JMFS134H02+ TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
JMFS091C07+ TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
JMFS018F02+ TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
JMSF029A03+ TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
JMFF049M01+ AGAAATGCAAGCGTCCATTNGAGAA
____________________________________________________________
consensus TAAAAAGGGCTACAATCCCTGTAACCAATCCAATGAGAAATGCAAGCGTCCATTTGAGAA
. : . : . : . : . : . :
JMFS165E10+ ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
JMFS057F10+ ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
JMFS134H02+ ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
JMFS091C07+ ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
JMFS018F02+ ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
JMSF029A03+ ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
JMFF049M01+ ATATGTATTGGAATATCTGAACCTTATTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
____________________________________________________________
consensus ATATGTATTGGAATATCTGAACCTTCTTCCTTGACCTCCAATCCTGTTTAATTAGGTCAT
. : . : . : . : . : . :
JMFS165E10+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
JMFS057F10+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
JMFS134H02+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
JMFS091C07+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
JMFS018F02+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
JMSF029A03+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
JMSF008L06+ TAATCGAGGCTTTCGATGGGGCAAACGTNGGCTCCAATAATGGCAA
JMFF049M01+ TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
____________________________________________________________
consensus TTTCAAGAATCTCGTAATCGAGGCTTTCGATGGGGCAAACGTTGGCTCCAATAATGGCAA
. : . : . : . : . : . :
JMFS165E10+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMFS057F10+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMFS134H02+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMFS091C07+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMFS018F02+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMSF029A03+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMSF008L06+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
JMFF049M01+ TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
____________________________________________________________
consensus TCTGCGATGTGTTATTGACTCTGCTCTTGGAAAGAAGCAAAGGCTCCCTGATTTGCCCCG
. : . : . : . : . : . :
JMFS165E10+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMFS057F10+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMFS134H02+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMFS091C07+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMFS018F02+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMSF029A03+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMSF008L06+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
JMFF049M01+ ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
____________________________________________________________
consensus ACGCCCACTCATCGTGACTCTCCGCCCCGTCATCGTGCCGTTCCCGCTCCCAATTACCAG
. : . : . : . : . : . :
JMFS165E10+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
JMFS057F10+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
JMFS134H02+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
JMFS091C07+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTACTTATCCATACAAAACTCCG
JMFS018F02+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
JMSF029A03+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
JMSF008L06+ CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
JMFF049M01+ CTCCGTTCCTCTCCGCCGCAT--TCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
____________________________________________________________
consensus CTCCGTTCCTCTCCGCCGCATTCTCTATATCTACCTCCTCCTTATCCATACAAAACTCCG
. : . : . : . : . : . :
JMFS165E10+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMFS057F10+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMFS134H02+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMFS091C07+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMFS018F02+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMSF029A03+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMSF008L06+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
JMFF049M01+ CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
____________________________________________________________
consensus CCGGCGTACGTAAGCTTCCGAATCTCACTGTTCACGAGCAAATCAGGCTCTAGGTTTCAG
. : . : . : . : . : . :
JMFS165E10+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTT
JMFS057F10+ ATAGAGCCGTTCAGATGCAATTTTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
JMFS134H02+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
JMFS091C07+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTT
JMFS018F02+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
JMSF029A03+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
JMSF008L06+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
JMFF049M01+ ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
____________________________________________________________
consensus ATAGAGCCGTTCAGATGCAATTCTCATCTGAATAAGGAAACGGTAATTTTTCCTTTTTCT
. : . : . : . : . : . :
JMFS057F10+ GTTAAAGCATGAGTAGAGGGAAGGAAGTTGGAGCGT
JMFS134H02+ GTTAAAGCATGAGTAGAGGGAAGGA
JMFS018F02+ GTTAAAGCATGAGTAGAGGGAAGGAAGTTGGAGCGTT
JMSF029A03+ GTTAAAGCATGAGTAGAGGGAAGGAAGTTGGAGCGTTGCGTGATCAT
JMSF008L06+ GTTAAAGCATGAGTAGAGGGAAGGAAGTTGGAGCGTTGCGTGATCATGTATAATA
JMFF049M01+ GTTAAAGCATGAGTAGAGGGAAGGAAGTTGGAGCGTTGCGTGATCATGTATAATAGGAGA
____________________________________________________________
consensus GTTAAAGCATGAGTAGAGGGAAGGAAGTTGGAGCGTTGCGTGATCATGTATAATAGGAGA