Contig 010315:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046P04Sequence529010315 (2)421001217 (2)
JMSF047B21Sequence674010315 (2)ref|XP_004239372.1|2e-22PREDICTED: probable serine/threonine-protein kinase At1g18390 [Solanum lycopers709001217 (2)ref|XP_009609054.1|4e-67PREDICTED: probable serine/threonine-protein kinase At1g18390 [Nicotiana toment

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+                                              GTTCTTGGTGAGCTTGCATTCCCAC
                      ____________________________________________________________
consensus                                                GTTCTTGGTGAGCTTGCATTCCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           GGNCAGTGGCTGCAGTTGGGGAGGCTAGCGGTCCGNCANGGGCGGAGGGCCGATAAGCGG
                      ____________________________________________________________
consensus             GGNCAGTGGCTGCAGTTGGGGAGGCTAGCGGTCCGNCANGGGCGGAGGGCCGATAAGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           GAGCAGGAAGAGTCCGAGACCCGGANCGGCGACCCGGAGAGAGAAATGGATCTCGCCGGA
                      ____________________________________________________________
consensus             GAGCAGGAAGAGTCCGAGACCCGGANCGGCGACCCGGAGAGAGAAATGGATCTCGCCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           ACCGACACAGAGCAGTTCCGGCGAGANTGATACATAGANGAAGCAGGAGAGAGGAGCAGG
                      ____________________________________________________________
consensus             ACCGACACAGAGCAGTTCCGGCGAGANTGATACATAGANGAAGCAGGAGAGAGGAGCAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           GAGGTGGAGGCGGGGTCGTAGTGGCGAAGAGAAAAGGAGAGATTGTTAATGGAGATGAGA
                      ____________________________________________________________
consensus             GAGGTGGAGGCGGGGTCGTAGTGGCGAAGAGAAAAGGAGAGATTGTTAATGGAGATGAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           GCAAAGCGAAGAGATGAGCAGTGGATTTGGAAAGAAGGGTGGCCGCAGCCGGGGGAGGCG
                      ____________________________________________________________
consensus             GCAAAGCGAAGAGATGAGCAGTGGATTTGGAAAGAAGGGTGGCCGCAGCCGGGGGAGGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           GAGAAGGGGTAAGGAGGAGGAGCGGCGGTGAAAGGCGGGCATGAGGAGGCGTTGACAGCA
                      ____________________________________________________________
consensus             GAGAAGGGGTAAGGAGGAGGAGCGGCGGTGAAAGGCGGGCATGAGGAGGCGTTGACAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           GAGGACGGCGGCGAGCANCCGTGAGCTAGCGCCGCTGCTGCTGTGATGAGAAATATTAGG
                      ____________________________________________________________
consensus             GAGGACGGCGGCGAGCANCCGTGAGCTAGCGCCGCTGCTGCTGTGATGAGAAATATTAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           AAGACGGCGGAATGCGGTGGCGGCATGGCGGAGCAAAAAGTGAGAATCTTTATTCTTTAA
                      ____________________________________________________________
consensus             AAGACGGCGGAATGCGGTGGCGGCATGGCGGAGCAAAAAGTGAGAATCTTTATTCTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           TTTAAAGGTGAATCATAAATGAGGAAAGAAGAAGAAGTAGGAATCTGGGAAAATGTAGGA
JMFF046P04+                      ATCATAAATGAGGAAAGAAGAAGAAGTAGGAATCTGGGAAAATGTAGGA
                      ____________________________________________________________
consensus             TTTAAAGGTGAATCATAAATGAGGAAAGAAGAAGAAGTAGGAATCTGGGAAAATGTAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           TGAATATAGTGTTGATGTAGATTTGGTTTTGAGATCATTCATTCATTGATTCATTAGGGG
JMFF046P04+           TGAATATAGTGTTGATGTAGATTTGGTTTTGAGATCATTCATTCATGNATTCATTAGGGG
                      ____________________________________________________________
consensus             TGAATATAGTGTTGATGTAGATTTGGTTTTGAGATCATTCATTCATTGATTCATTAGGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF047B21+           ATGGATGCCTAGGATGTTGGAAGAAAGTTGGTGGGTGTTGTGGAGGAC            
JMFF046P04+           ATGGATGCCTAGGATGTTGGAAGAAAGTTGGTGGGTTTTGTGGAGGACGAGGAAGTTGGA
                      ____________________________________________________________
consensus             ATGGATGCCTAGGATGTTGGAAGAAAGTTGGTGGGTTTTGTGGAGGACGAGGAAGTTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046P04+           AGTGGGAAGATGTAAGAATAGTAGAAGAGAAGGGGAGAGAGGTCACGTGAAGAGAATGGG
                      ____________________________________________________________
consensus             AGTGGGAAGATGTAAGAATAGTAGAAGAGAAGGGGAGAGAGGTCACGTGAAGAGAATGGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046P04+           ATGAAGACAAATCTGTATAAAAAGGTGGAAGACCAAGGCTGTCAAATTTTTGTGATGAAA
                      ____________________________________________________________
consensus             ATGAAGACAAATCTGTATAAAAAGGTGGAAGACCAAGGCTGTCAAATTTTTGTGATGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046P04+           ACGGCATAAGTGTAACTCTTCTAAATAGAATGTCACAATTTAAACTTCAATAAGGGTATT
                      ____________________________________________________________
consensus             ACGGCATAAGTGTAACTCTTCTAAATAGAATGTCACAATTTAAACTTCAATAAGGGTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046P04+           AATTTTTTGTACTTAAATATGTTTAAAAATATATATATATATATATATATGAAACAGATA
                      ____________________________________________________________
consensus             AATTTTTTGTACTTAAATATGTTTAAAAATATATATATATATATATATATGAAACAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046P04+           CTACGCTGTAACAGAATTAAAAAAAAATGAAATTTTTGAACAAACAACCTCTACATACTC
                      ____________________________________________________________
consensus             CTACGCTGTAACAGAATTAAAAAAAAATGAAATTTTTGAACAAACAACCTCTACATACTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF046P04+           TACCCTCATCATTTCATTCATCTATTTTTTTTTTTAAACACTATTCTTATTTATGTAGGT
                      ____________________________________________________________
consensus             TACCCTCATCATTTCATTCATCTATTTTTTTTTTTAAACACTATTCTTATTTATGTAGGT