Contig 010311:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046B24Sequence437010311 (2)ref|XP_009594035.1|185PREDICTED: uncharacterized protein LOC104090605 [Nicotiana tomentosiformis]396004130 (2)
JMFF049K13Sequence512010311 (2)ref|XP_009594035.1|255PREDICTED: uncharacterized protein LOC104090605 [Nicotiana tomentosiformis]509004130 (2)emb|CDP00268.1|1e-28unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+                                                                    GAT
                      ____________________________________________________________
consensus                                                                      GAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           GAGGGATATCGTGCGTAACAGAGTTCCTCCACGGCGGCAAGCCTCCGTTGGCCCTCAAGA
                      ____________________________________________________________
consensus             GAGGGATATCGTGCGTAACAGAGTTCCTCCACGGCGGCAAGCCTCCGTTGGCCCTCAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           ACTGCCCATACCTTGTTCTGAGCTTCACCTGATTCCCATCCCTAACCGGCTCCCACTCGA
JMFF046B24+                                                      AACCGGCTCCCACTCGA
                      ____________________________________________________________
consensus             ACTGCCCATACCTTGTTCTGAGCTTCACCTGATTCCCATCCCTAACCGGCTCCCACTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           CGGAGGAATCAAGGCGGCGGGGCAAAGTTTGCAGCACTTTCCGGCCGGTCATGCCGAGCA
JMFF046B24+           CGGAGGAATCAAGGCGGCGGGGCAAAGTTGNCAGCACTTTCCGGCCGGTCATGCCGAGCA
                      ____________________________________________________________
consensus             CGGAGGAATCAAGGCGGCGGGGCAAAGTTTGCAGCACTTTCCGGCCGGTCATGCCGAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           GAAACGGCTGGTTGGAAGCCGTCAAGTACTTGCCGTAACAGCTCTTAAGGCGGACGGCGT
JMFF046B24+           GAAACGGCTGGTTGGAAGCCGTCAAGTACTTGCCGTAACAGCTCTTAAGGCGGACGGCGT
                      ____________________________________________________________
consensus             GAAACGGCTGGTTGGAAGCCGTCAAGTACTTGCCGTAACAGCTCTTAAGGCGGACGGCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           TGTCGGTGTTCTCCGGGAACTCCACCGTCCACCGCGCGCTCTTGGCGTTGCCGTTACGGT
JMFF046B24+           TGTCGGTGTTCTCCGGGAACTCCACCGTCCACCGCGCGCTCTTGGCGTTGCCGTTACGGT
                      ____________________________________________________________
consensus             TGTCGGTGTTCTCCGGGAACTCCACCGTCCACCGCGCGCTCTTGGCGTTGCCGTTACGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           CTTGGGTCACCGACTCTTCGTGTTCCTCGGCGGTCAAGTACTTGTCGTGGTGGCTCCTCA
JMFF046B24+           CTTGGGTCACCGACTCTTCGTCTTCCTCGGCGGTCAAGTACTTGTCGTGGTGGCTCCTCA
                      ____________________________________________________________
consensus             CTTGGGTCACCGACTCTTCGTGTTCCTCGGCGGTCAAGTACTTGTCGTGGTGGCTCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           ACCGCACCGTCTTAGCTCGGTGGAACATCTCCATGGCTGGGAGATTGAACGAAGGGGTAG
JMFF046B24+           ACCGCACCGTCTTAGCTCGGTGGAACATCTCCATGGCTGGGAGATTGAACGAAGGGGTAG
                      ____________________________________________________________
consensus             ACCGCACCGTCTTAGCTCGGTGGAACATCTCCATGGCTGGGAGATTGAACGAAGGGGTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           TCTGTAGATTATTATAAGGTATATTACAAGCACAAAATGTTAGGAAATTTTGAGGTTTTG
JMFF046B24+           TCTGTGGATTATTATAAGGTATATTACAAGCACAAAATGTTAGGAAATTTTGAGGTTTTG
                      ____________________________________________________________
consensus             TCTGTGGATTATTATAAGGTATATTACAAGCACAAAATGTTAGGAAATTTTGAGGTTTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049K13+           AAGAAAAAAATTGGATTAGATGAGACTAT                               
JMFF046B24+           AAGAAAAAAATTGGATTAGATGAGACTATGATGTTTTGTTTTTCTATTTCTAGTTAACAT
                      ____________________________________________________________
consensus             AAGAAAAAAATTGGATTAGATGAGACTATGATGTTTTGTTTTTCTATTTCTAGTTAACAT