Contig 010308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028H03Sequence495010308 (2)emb|CDH92856.1|8e-57omega-6 fatty acid desaturase, partial [Sesamum radiatum]638001402 (9)gb|AIC34705.1|2e-85omega-6 fatty acid desaturase [Rhus chinensis] gb|AIC34706.1| omega-6 fatty acid
JMFF045M08Sequence628010308 (2)emb|CDH92856.1|3e-90omega-6 fatty acid desaturase, partial [Sesamum radiatum]620001402 (9)gb|AIC34705.1|3e-77omega-6 fatty acid desaturase [Rhus chinensis] gb|AIC34706.1| omega-6 fatty acid

Alignment

This contig is upended


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JMFF045M08+                                           GACAAAGACTTCATCACGCTCAAGGGAA
                      ____________________________________________________________
consensus                                             GACAAAGACTTCATCACGCTCAAGGGAA
 
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JMFF045M08+           CCCGTGTTGGAATGATGGCGGCGGTGACTATATTTCCATGAGAAGTAGGGTACGAAAAGG
                      ____________________________________________________________
consensus             CCCGTGTTGGAATGATGGCGGCGGTGACTATATTTCCATGAGAAGTAGGGTACGAAAAGG
 
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JMFF028H03+                                                       ATCACTAAAAGCATGG
JMFF045M08+           GCAGAGTGAAGGATAAGGCCAACAGTATCATCCACCCATTGGTAATCACTAAAAGCATGG
                      ____________________________________________________________
consensus             GCAGAGTGAAGGATAAGGCCAACAGTATCATCCACCCATTGGTAATCACTAAAAGCATGG
 
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JMFF028H03+           TGGCCACATTCATGGGCTATAACCCAGATCCCAGTGCAGACACAACCTTGAAGAGCCCAA
JMFF045M08+           TGGCCACATTCATGGGCTATAACCCAGATCCCAGTGCAGACACAACCTTGAAGAGCCCAA
                      ____________________________________________________________
consensus             TGGCCACATTCATGGGCTATAACCCAGATCCCAGTGCAGACACAACCTTGAAGAGCCCAA
 
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JMFF028H03+           TAAATAGGCCATGCAAGGTATTGATAAGTAGATGGAAGCAAATGGATATAATTGGTGGCT
JMFF045M08+           TAAATAGGCCATGCAAGGTATTGATAAGTAGATGGAAGCAAATGGATATAATTGGTGGCT
                      ____________________________________________________________
consensus             TAAATAGGCCATGCAAGGTATTGATAAGTAGATGGAAGCAAATGGATATAATTGGTGGCT
 
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JMFF028H03+           ATGTAGTAGAAAAGAGCAACGAAGAACAAGTCATACACAACATATGAGAATGACCGAATA
JMFF045M08+           ATGTAGTAGAAAAGAGCAACGAAGAACAAGTCATACACAACATATGAGAATGACCGAATA
                      ____________________________________________________________
consensus             ATGTAGTAGAAAAGAGCAACGAAGAACAAGTCATACACAACATATGAGAATGACCGAATA
 
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JMFF028H03+           AGCGATCGCTCAAAGCAATGAGGAGGGATGGCCTTCTTGATATCACTTAGGGAGAATTTA
JMFF045M08+           AGCGATCGCTCAAAGCAATGAGGAGGGATGGCCTTCTTGATATCACTTAGGGAGAATTTA
                      ____________________________________________________________
consensus             AGCGATCGCTCAAAGCAATGAGGAGGGATGGCCTTCTTGATATCACTTAGGGAGAATTTA
 
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JMFF028H03+           GGCTTAGTATATGGAACCCTTTCAAGTGGGTTCTTCTTAAAACCAGATTCAGTTGAAGAT
JMFF045M08+           GGCTTAGTATATGGAACCCTTTCAAGTGGGTTCTTCTTAAAACCAGATTCAGTTGAAGAT
                      ____________________________________________________________
consensus             GGCTTAGTATATGGAACCCTTTCAAGTGGGTTCTTCTTAAAACCAGATTCAGTTGAAGAT
 
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JMFF028H03+           GAAATTCGGCCACCAGCACCCATGGCTCTCTACACCTTCAAATCCCAAGCCTGCAAAATT
JMFF045M08+           GAAATTCGGCCACCAGCACCCATGGCTCTCTACACCTTCAAATCCCAAGCCTGCAAAATT
                      ____________________________________________________________
consensus             GAAATTCGGCCACCAGCACCCATGGCTCTCTACACCTTCAAATCCCAAGCCTGCAAAATT
 
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JMFF028H03+           GGAAACTTTTCTATTTATTCAAGAAAGTAAATTGAGGATAGCATGAAAAATAATTCATGC
JMFF045M08+           GGAAACTTTTCTATTTATTCAAGAAAGTAAATTGAGGATAGCATGAAAAATAATTCATGC
                      ____________________________________________________________
consensus             GGAAACTTTTCTATTTATTCAAGAAAGTAAATTGAGGATAGCATGAAAAATAATTCATGC
 
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JMFF028H03+           TCTGGCATTCAGTGGCAGAGAGAGAGTGCAGTGTACTTCTCAGTAAATGAACACA     
JMFF045M08+           TCTGGCATTCAGTGGCAGAGAGAGAGTGCAGTGTACTTCTCAGTAAATGAACACATCATA
                      ____________________________________________________________
consensus             TCTGGCATTCAGTGGCAGAGAGAGAGTGCAGTGTACTTCTCAGTAAATGAACACATCATA