Contig 010305:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010F05Sequence541010305 (2)ref|XP_006338059.1|4e-53PREDICTED: argininosuccinate lyase, chloroplastic-like [Solanum tuberosum]746006952 (18)ref|XP_009761153.1|5e-106PREDICTED: argininosuccinate lyase, chloroplastic-like [Nicotiana sylvestris]
JMFF044M05Sequence602010305 (2)ref|XP_006338059.1|5e-63PREDICTED: argininosuccinate lyase, chloroplastic-like [Solanum tuberosum]619006952 (18)ref|XP_009761153.1|1e-61PREDICTED: argininosuccinate lyase, chloroplastic-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF044M05+                                                                     TG
                      ____________________________________________________________
consensus                                                                       TG
 
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JMFF010F05+                                                                  AAGTC
JMFF044M05+           AAGATTCTGNATGCGTGAAATAATTCTGTCAATAGCATCACGGCACCATAAACGGAAGTC
                      ____________________________________________________________
consensus             AAGATTCTGNATGCGTGAAATAATTCTGTCAATAGCATCACGGCACCATAAACGGAAGTC
 
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JMFF010F05+           AGTTGCAACTTGATCATTTCGACTCCTAGCAGTATGAAGCTTCTTTGCAGATTCACCCAC
JMFF044M05+           AGTTGCAACTTGATCATTTCGACTCCTAGCAGTATGAAGCTTCTTTGCAGATTCACCCAC
                      ____________________________________________________________
consensus             AGTTGCAACTTGATCATTTCGACTCCTAGCAGTATGAAGCTTCTTTGCAGATTCACCCAC
 
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JMFF010F05+           TAAATCAGTAAGAGCTGCTTCAATGTTCATGTGCACATCCTCTCTGTCAGTCCTCCACAA
JMFF044M05+           TAAATCAGTAAGAGCTGCTTCAATGTTCATGTGCACATCCTCTCTGTCAGTCCTCCACAA
                      ____________________________________________________________
consensus             TAAATCAGTAAGAGCTGCTTCAATGTTCATGTGCACATCCTCTCTGTCAGTCCTCCACAA
 
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JMFF010F05+           GAACTTGCCTGCTTCAATTTGCCTTTCTATCTCATCTAGACCTTGTAGAATTGTATCCCT
JMFF044M05+           GAACTTGCCTGCTTCAATTTGCCTTTCTATCTCATCTAGACCTTGTAGAATTGTATCCCT
                      ____________________________________________________________
consensus             GAACTTGCCTGCTTCAATTTGCCTTTCTATCTCATCTAGACCTTGTAGAATTGTATCCCT
 
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JMFF010F05+           GGGCGGCAAGCATAGAGGCGTGGGCTCGGCTGCCCATGATATCATGCTTGTAGAGAGCTT
JMFF044M05+           GGGCGGCAAGCATAGAGGCGTGGGCTCGGCTGCCCATGATATCATGCTTGTAGAGAGCTT
                      ____________________________________________________________
consensus             GGGCGGCAAGCATAGAGGCGTGGGCTCGGCTGCCCATGATATCATGCTTGTAGAGAGCTT
 
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JMFF010F05+           TGTCGAACGATATGGATTCGGTGAACTTCTCCACGGCGTCCGTCACGCTCTCCTCGAAGC
JMFF044M05+           TGTCGAACGATATGGATTCGGTGAACTTCTCCACGGCGTCCGTCACGCTCTCCTCGAAGC
                      ____________________________________________________________
consensus             TGTCGAACGATATGGATTCGGTGAACTTCTCCACGGCGTCCGTCACGCTCTCCTCGAAGC
 
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JMFF010F05+           GTCCGCCCCACAGCTTCGCTTCCTTCTCTTTTGCCATGGAAGGTGGCGGCGCGTTGACGT
JMFF044M05+           GTCCGCCCCACAGCTTCGCTTCCTTCTCTTTTGCCATGGAAGGTGGCGGCGCGTTGACGT
                      ____________________________________________________________
consensus             GTCCGCCCCACAGCTTCGCTTCCTTCTCTTTTGCCATGGAAGGTGGCGGCGCGTTGACGT
 
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JMFF010F05+           GCTGCGAGGCGTGCGCGAGAAACGGAAAGCGCGCAGCTCGGGCGAAGAAGGGTTTCGCCG
JMFF044M05+           GCTGCGAGGCGTGCGCGAGAAACGGAAAGCGCGCAGCTCGGGCGAAGAAGGGTTTCGCCG
                      ____________________________________________________________
consensus             GCTGCGAGGCGTGCGCGAGAAACGGAAAGCGCGCAGCTCGGGCGAAGAAGGGTTTCGCCG
 
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JMFF010F05+           TAAGGGCGTGGTTGTGTGGAGATAGAGTAGGGGAAAATGTCGAACAGGTTGAGCGCACTA
JMFF044M05+           TAAGGGCGTGGTTGTGTGGAGATAGAGTAGGGGAAAATGTCGAACAGGTTGAGCGCACTA
                      ____________________________________________________________
consensus             TAAGGGCGTGGTTGTGTGGAGATAGAGTAGGGGAAAATGTCGAACAGGTTGAGCGCACTA
 
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JMFF010F05+           ACAATGACTCCATCGACGCCGCCACTCAGCTCAAACAATCCAGACCGGAGAGAGTG    
JMFF044M05+           ACAATGACTCCATCGACGCCGCCACTCAGCTCAAACAATCCAGACCGGAGAGAGTGCGAT
                      ____________________________________________________________
consensus             ACAATGACTCCATCGACGCCGCCACTCAGCTCAAACAATCCAGACCGGAGAGAGTGCGAT