Contig 010299:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043F03Sequence636010299 (3)gb|AHB32108.1|2e-75dihydropyrimidinase-like protein [Camellia sinensis]595009780 (3)gb|AAK44096.1|AF370281_15e-63putative dihydropyrimidinase [Arabidopsis thaliana] gb|AAL34189.1| putative dihy
JMSF013K02Sequence495010299 (3)gb|AHB32108.1|1e-52dihydropyrimidinase-like protein [Camellia sinensis]770009780 (3)gb|AAK44096.1|AF370281_12e-93putative dihydropyrimidinase [Arabidopsis thaliana] gb|AAL34189.1| putative dihy
JMSF040N19Sequence621010299 (3)gb|AHB32108.1|2e-77dihydropyrimidinase-like protein [Camellia sinensis]846009780 (3)gb|AAK44096.1|AF370281_13e-121putative dihydropyrimidinase [Arabidopsis thaliana] gb|AAL34189.1| putative dihy

Alignment

This contig is upended


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JMSF040N19+                                TCTACATATGCTTCAAAACCTGCAGATAGACTACCCTTT
JMFF043F03+                                   ACATATGCTTCAAAACCTGCAGATAGACTACCCTTN
                      ____________________________________________________________
consensus                                  TCTACATATGCTTCAAAACCTGCAGATAGACTACCCTTT
 
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JMSF040N19+           ACAGGAATAACAAAATCTATATGCATGGTTGTTCCGCCTGCTAATGCAGCAGCCTGTCCA
JMFF043F03+           ACAGGAATAACAANATCTATATGCATGGTTGTTCCGCCTGCTAATGCAGCAGCCTGTCCA
                      ____________________________________________________________
consensus             ACAGGAATAACAAAATCTATATGCATGGTTGTTCCGCCTGCTAATGCAGCAGCCTGTCCA
 
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JMSF040N19+           CTGAAAAAGTCATCAATTGTCTGAGTACCCATGAATTCCATTGCCAGGTGTGTGTGAGGA
JMSF013K02+              AAAAAGTCATCAATTGTCTGAGTACCCATGAATTCCATTGCCAGGTGTGTGTGAGGA
JMFF043F03+           CTGAAAAAGTCATCAATTGTCTGAGTACCCATGAATTCCATTGCCAGGTGTGTGTGAGGA
                      ____________________________________________________________
consensus             CTGAAAAAGTCATCAATTGTCTGAGTACCCATGAATTCCATTGCCAGGTGTGTGTGAGGA
 
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JMSF040N19+           TCAATTCCCCCTGGCATGACAAACTTTCCAGTTGCATCAATAATTTTCACATCATCACCA
JMSF013K02+           TCAATTCCCCCTGGCATGACAAACTTTCCAGTTGCATCAATAATTTTCACATCATCACCA
JMFF043F03+           TCAATTCCCCCTGGCATGACAAACTTTCCAGTTGCATCAATAATTTTCACATCATCACCA
                      ____________________________________________________________
consensus             TCAATTCCCCCTGGCATGACAAACTTTCCAGTTGCATCAATAATTTTCACATCATCACCA
 
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JMSF040N19+           ACCTTGATGTTAGGCTTCACAGCCGCAATGATACCATCCTCCACGTACACATCGGACACC
JMSF013K02+           ACCTTGATGTTAGGCTTCACAGCCGCAATGATACCATCCTCCACGTACACATCGGACACC
JMFF043F03+           ACCTTGATGTTAGGCTTCACAGCCGCAATGATACCATCCTCCACGTACACATCGGACACC
                      ____________________________________________________________
consensus             ACCTTGATGTTAGGCTTCACAGCCGCAATGATACCATCCTCCACGTACACATCGGACACC
 
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JMSF040N19+           TCCTGATGATGAGCATTCACAACAGTCCCTCCCTTAATCAGTATCTTCGACGACGAAATG
JMSF013K02+           TCCTGATGATGAGCATTCACAACAGTCCCTCCCTTAATCAGTATCTTCGACGACGAAATG
JMFF043F03+           TCCTGATGATGAGCATTCACAACAGTCCCTCCCTTAATCAGTATCTTCGACGACGAAATG
                      ____________________________________________________________
consensus             TCCTGATGATGAGCATTCACAACAGTCCCTCCCTTAATCAGTATCTTCGACGACGAAATG
 
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JMSF040N19+           CCGCATCCGGATTCTCCATATCCAATTCCAGCATCACAAAACTGGCCGGATTGTAACGAA
JMSF013K02+           CCGCATCCGGATTCTCCATATCCAATTCCAGCATCACAAAACTGGCCGGATTGTAACGAA
JMFF043F03+           CCGCATCCGGATTCTCCATATCCAATTCCAGCATCACAAAACTGGCCGGATTGTAACGAA
                      ____________________________________________________________
consensus             CCGCATCCGGATTCTCCATATCCAATTCCAGCATCACAAAACTGGCCGGATTGTAACGAA
 
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JMSF040N19+           GGCGCAATGATGGATGAGAGAACGATGAGAGATATGAAATGAATCGCCTGAGCTCGGAGC
JMSF013K02+           GGCGCAATGATGGATGAGAGAACGATGAGAGATATGAAATGAATCGCCTGAGCTCGGAGC
JMFF043F03+           GGCGCAATGATGGATGAGAGAACGATGAGAGATATGAAATGAATCGCCTGAGCTCGGAGC
                      ____________________________________________________________
consensus             GGCGCAATGATGGATGAGAGAACGATGAGAGATATGAAATGAATCGCCTGAGCTCGGAGC
 
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JMSF040N19+           CTGAAATCCATGACCGGAGAGAGCTGAGTTTCTGCGAGCGATGGCGTTGAGTTTTAGTGT
JMSF013K02+           CTGAAATCCATGACCGGAGAGAGCTGAGTTTCTGCGAGCGATGGCGTTGAGTTTTAGTGT
JMFF043F03+           CTGAAATCCATGACCGGAGAGAGCTGAGTTTCTGCGAGCGATGGCGTTGAGTTTTAGTGT
                      ____________________________________________________________
consensus             CTGAAATCCATGACCGGAGAGAGCTGAGTTTCTGCGAGCGATGGCGTTGAGTTTTAGTGT
 
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JMSF040N19+           GGGCCTGTGGGGCGTTCTCAGTTTGTTGAGGTCAAAGAAGATATCGTATCGAATCGAATT
JMSF013K02+           GGGCCTGTGGGGCGTTCTCAGTTTGTTGAGGTCAAAGAAGATATCGTATCGAATCGAATT
JMFF043F03+           GGGCCTGTGGGGCGTTCTCAGTTTGTTGAGGTCAAAGAAGATATCGTATCGAATCGAATT
                      ____________________________________________________________
consensus             GGGCCTGTGGGGCGTTCTCAGTTTGTTGAGGTCAAAGAAGATATCGTATCGAATCGAATT
 
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JMSF040N19+           AAAACTTAAAAGTCGTTAACTGAGACTTGTACAACTCGTATC                  
JMSF013K02+           AAAACTTAAAAGTCGTT                                           
JMFF043F03+           AAAACTTAAAAGTCGTTAACTGAGACTTGTACAACTCGTATCCTGTTACTTGGAGGCAAT
                      ____________________________________________________________
consensus             AAAACTTAAAAGTCGTTAACTGAGACTTGTACAACTCGTATCCTGTTACTTGGAGGCAAT